Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00756
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 49 5e-06
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 48 1e-05
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 46 3e-05
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 44 1e-04
02_05_0250 + 27153048-27154453,27154546-27154885 31 0.76
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 4.1
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 4.1
10_01_0357 - 3928646-3928954 28 9.4
07_01_0200 + 1433859-1434377 28 9.4
07_01_0196 + 1400708-1401226 28 9.4
07_01_0192 + 1367558-1368076 28 9.4
07_01_0188 + 1334405-1334923 28 9.4
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/54 (37%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Frame = +2
Query: 2 YLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 160
+++L+ +NG+ ++DL++P D +L +Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 134 FVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/54 (37%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +2
Query: 2 YLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 160
+++L+ ++G+ ++DL++P D L Q++T F GK+L+ TV+ + GEE + A+K
Sbjct: 119 FVSLLTESGNTKDDLRLPTDDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALK 172
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/54 (37%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +2
Query: 2 YLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 160
+++L+ ++G ++DL++P D L TQ++ F GK+L+ TV+ + GEE + A+K
Sbjct: 1437 FVSLLTESGGTKDDLRLPSDEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/55 (34%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Frame = +2
Query: 2 YLTLMADNGDLREDLKIPDGD-LGTQLRTDF-DSGKELLCTVLKSCGEECVIAVK 160
+++L+ ++G+ ++DL++P D L Q++ F + GK+++ TV+ + GEE + AVK
Sbjct: 102 FVSLLTESGNTKDDLRLPTDDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVK 156
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 31.5 bits (68), Expect = 0.76
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 17 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTA 172
A GD DL IPD + TQ+ T+ S C V S G C AV A+ +
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNS 298
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 23 NGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKAN 166
N D D I G GTQ D +L +VLKS + CV A KA+
Sbjct: 730 NRDTDIDHFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKAS 777
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 53 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 139
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>10_01_0357 - 3928646-3928954
Length = 102
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +3
Query: 15 WLTTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAPC*NPAVRSASSP 155
W ++ + V SA T+ A C PC NP RS P
Sbjct: 3 WAAAAAATASAAATAVASA----ATAAATERCVTPCSNPTARSIPRP 45
>07_01_0200 + 1433859-1434377
Length = 172
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 189 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 103
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0196 + 1400708-1401226
Length = 172
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 189 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 103
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0192 + 1367558-1368076
Length = 172
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 189 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 103
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0188 + 1334405-1334923
Length = 172
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 189 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 103
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,822,277
Number of Sequences: 37544
Number of extensions: 288538
Number of successful extensions: 1036
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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