Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00756
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                60   2e-09
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)                30   2.3  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                29   3.1  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   7.2  
SB_20312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +2

Query: 2   YLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 160
           YL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ VK
Sbjct: 652 YLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVGVK 704


>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
          Length = 1049

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 207 NPINAELVYLSRAVF---ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSS 37
           NP    L Y + A+F    + A    S QD+  +H NS      + N +P+  S I ++ 
Sbjct: 69  NPSFGPLNYATMAIFPPNTVPAPPQDSTQDYREIHTNSFYFQHQMSNTLPKEES-IQQAD 127

Query: 36  RRSPLSAIRV 7
             +P   + V
Sbjct: 128 ESAPHDILSV 137


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 356 PHPLTSPTRSVVSPPAP*YLPNL 424
           P P  SP+   +SPPAP ++P++
Sbjct: 184 PAPAISPSAPAISPPAPVFIPHM 206


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 135 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 4
           P+  S V + +LP+   V  C+P SPS I RS    P     VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295


>SB_20312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 216 KFVNPINAELVY---LSRAVFALTAMTHSSPQDFSTVHNNSLPLSKSVRNC 73
           KF++P +A +      +R+  + T M+H SP + +T   +     KS R C
Sbjct: 23  KFIDPTSARISNQKAANRSQQSATQMSHKSPTNCTTCRMSDFSAGKSRREC 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,232,607
Number of Sequences: 59808
Number of extensions: 335197
Number of successful extensions: 1022
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)