Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00756
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...    53   2e-07
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...    52   3e-07
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...    50   1e-06
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic...    30   1.5  
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ...    29   3.4  
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea...    28   7.8  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/54 (42%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2   YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 160
           Y++L+ DNG  ++DLK+P+ D L  Q+++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 100 YVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALK 153


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2   YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 160
           +++L+ D+G  ++DLK+P  D L  Q+R  FD GK+++ +V+ S GEE + AVK
Sbjct: 100 FVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVK 153


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/54 (40%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2   YLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 160
           +++L+ DNG  ++DLK+P D  L TQL+  F+ GK+++ +V+ + GEE + A+K
Sbjct: 100 FVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALK 153


>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
           to gi|10880497|gb|AAG24278; supported by Ceres cDNA
           265772
          Length = 127

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 329 SPSLTSLAIPHPLTSPTRSVVSPPAP*YLPN 421
           +PS+T    P P  +PT + VSPPA   LP+
Sbjct: 46  TPSITPTPTPTPSATPTAAPVSPPAGSPLPS 76


>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 591

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 44  LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 145
           L IPDGD  T L      G   +C  L SCG  C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445


>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           GTP-binding protein beta chain homolog, Nicotiana
           tabacum, PIR:T16970
          Length = 438

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 172 SCVCFDGDDALLTAGFQHGA 113
           +C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,235,390
Number of Sequences: 28952
Number of extensions: 226465
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)