Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00755
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 122 2e-28
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 53 3e-07
08_02_0010 - 11230407-11232416 30 2.4
08_02_0009 + 11216532-11218687,11220727-11225998 30 2.4
08_02_0006 + 11204835-11206382 30 2.4
08_02_0003 + 11180421-11180757,11180773-11185715 30 2.4
08_02_0002 + 11173365-11173512,11173528-11178470 30 2.4
08_01_1086 - 11150017-11151564 30 2.4
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96... 29 4.1
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 28 7.2
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089... 28 9.5
01_05_0404 - 21833736-21834035,21834506-21834662,21834834-218350... 28 9.5
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 122 bits (295), Expect = 2e-28
Identities = 59/86 (68%), Positives = 66/86 (76%)
Frame = +2
Query: 260 IVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEY 439
IVA+DLQ MA + GV Q+QGDIT TA +I F G KADLVVCDGAPDVTGLHD+DE+
Sbjct: 81 IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 140
Query: 440 VQSQLLLAALNITTHVLKNEGTFWPK 517
VQSQL+LAAL I THVLK G F K
Sbjct: 141 VQSQLILAALTIVTHVLKVGGKFVAK 166
Score = 93.5 bits (222), Expect = 2e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = +1
Query: 40 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 189
MGK SKDKRDIYYR AKEEGWRARSAFKLLQI++E+NIF+GV R VDLCA
Sbjct: 1 MGKASKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCA 50
Score = 77.0 bits (181), Expect = 2e-14
Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Frame = +1
Query: 508 LAKIFRGKDVSLLYSQ----LKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNM 675
+AKIFRGKD SLLY Q LK FF VT +KP+SSRNSSIEAF +CE Y+PPE +
Sbjct: 164 VAKIFRGKDTSLLYCQCFMQLKLFFSQVTFAKPKSSRNSSIEAFAVCENYSPPEGFKEKD 223
Query: 676 VNPLLD 693
+ LL+
Sbjct: 224 LYHLLE 229
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 192 PGSWSQVLTKNLRQNAVNTEDLK 260
PGSWSQVL++NL A + D K
Sbjct: 52 PGSWSQVLSRNLYVPAKQSPDCK 74
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +1
Query: 40 MGKTS-KDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 189
MGKT K ++D +Y LAKE+G+R+R+AFKLLQ++ + +DLCA
Sbjct: 1 MGKTKGKQRQDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCA 51
Score = 41.1 bits (92), Expect = 0.001
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Frame = +2
Query: 251 GFKIVAVDLQAMAALPGVKQIQGDITKQETANAI--IEEFQGLKA-DLVVCDGAPDVTGL 421
G +V VDL + + G + DIT + A+ + + G+ A D+V+ DG+P+V G
Sbjct: 67 GAFVVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNVGGA 126
Query: 422 HDIDEYVQSQLLLAALNITTHVLKNEGTFWPK 517
+ QS L++ A+ + T L +G F K
Sbjct: 127 WAQEATAQSSLVIDAVRLATMFLAPKGAFITK 158
>08_02_0010 - 11230407-11232416
Length = 669
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 4 ILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 105
I+K +F E + K S ++ +IY +A E WR
Sbjct: 543 IMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 576
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 4 ILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 105
I+K +F E + K S ++ +IY +A E WR
Sbjct: 2349 IMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 2382
>08_02_0006 + 11204835-11206382
Length = 515
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 4 ILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 105
I+K +F E + K S ++ +IY +A E WR
Sbjct: 389 IMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 422
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 4 ILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 105
I+K +F E + K S ++ +IY +A E WR
Sbjct: 1633 IMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 1666
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 4 ILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 105
I+K +F E + K S ++ +IY +A E WR
Sbjct: 1570 IMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 1603
>08_01_1086 - 11150017-11151564
Length = 515
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 4 ILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 105
I+K +F E + K S ++ +IY +A E WR
Sbjct: 389 IMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 422
>07_01_0129 -
959600-959625,960100-961428,961585-961657,962185-962226
Length = 489
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 676 PYSAHNLLGDCI-SRKLQRLQCSNFL 602
PYS H LL +C+ SR+L+R NFL
Sbjct: 187 PYSMHLLLDNCLFSRQLEREHIMNFL 212
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 4 ILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 105
I+K +F E K S ++ +IY +A E WR
Sbjct: 990 IMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR 1023
>02_03_0155 +
15805683-15805743,15805824-15806105,15808293-15808959,
15809440-15810490
Length = 686
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 182 FAQTRQLESSFNQEPSTKCC-KY*GFKIVAVDLQAMAALPGVKQIQGDITKQE 337
+A T+ L + +Q P TKCC K K +A L AL I ++ K +
Sbjct: 56 YASTKMLYEALSQSPLTKCCIKERSLKRLAAILYGCGALIYTMYITPNLKKSK 108
>01_05_0404 -
21833736-21834035,21834506-21834662,21834834-21835080,
21835424-21835637,21836565-21836728,21836843-21836950,
21841596-21841797,21843676-21844194
Length = 636
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 299 GVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHD 427
G+ +GD T E AN + + F+ + + CD D T +D
Sbjct: 90 GIALCRGDYTGDECANGLRKAFENAVENRLFCDRFRDATIYYD 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,262,479
Number of Sequences: 37544
Number of extensions: 407716
Number of successful extensions: 1053
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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