Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00755
(777 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52274| Best HMM Match : FtsJ (HMM E-Value=0) 140 2e-33
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.4
SB_1686| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-12) 30 1.8
SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22) 30 2.4
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 30 2.4
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09) 30 2.4
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13) 28 7.3
SB_37096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_52274| Best HMM Match : FtsJ (HMM E-Value=0)
Length = 316
Score = 140 bits (338), Expect = 2e-33
Identities = 69/87 (79%), Positives = 72/87 (82%)
Frame = +2
Query: 257 KIVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDE 436
KIVAVDLQAMA LPGV QIQGDITK TAN II F+G ADLV+CDGAPDVTGLHDIDE
Sbjct: 76 KIVAVDLQAMAPLPGVIQIQGDITKTSTANQIISHFEGEHADLVICDGAPDVTGLHDIDE 135
Query: 437 YVQSQLLLAALNITTHVLKNEGTFWPK 517
Y+Q QLLLAALNITTHVLK G F K
Sbjct: 136 YIQGQLLLAALNITTHVLKPGGNFVAK 162
Score = 111 bits (267), Expect = 6e-25
Identities = 53/81 (65%), Positives = 62/81 (76%)
Frame = +1
Query: 508 LAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNPL 687
+AKIFRGKDVSLLY+QLK FF VT+ KPRSSRNSSIE+FV+C+ Y PP+ Y P M NPL
Sbjct: 160 VAKIFRGKDVSLLYAQLKVFFPTVTICKPRSSRNSSIESFVVCQGYAPPQGYKPTMSNPL 219
Query: 688 LDHKYFDLNSDFNSFTGINRL 750
LD N DFNS G+NR+
Sbjct: 220 LDSHQ---NPDFNSLEGVNRI 237
Score = 92.3 bits (219), Expect = 4e-19
Identities = 39/50 (78%), Positives = 48/50 (96%)
Frame = +1
Query: 40 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 189
MG++SKDKRDIYYRLAKEEGWRARSAFKLLQ+NE++++F+GV + VDLCA
Sbjct: 1 MGRSSKDKRDIYYRLAKEEGWRARSAFKLLQLNEDFDLFSGVSKVVDLCA 50
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 316 RGYYQTRNSKCYNRRVPRPQSRFGCM 393
RG +R + C++R+VPRP+ + CM
Sbjct: 609 RGTGGSRVASCFHRKVPRPKCKVSCM 634
>SB_1686| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-12)
Length = 362
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +2
Query: 59 ISEIYITGLLKKKVGVHVAHLNFCKLTRNTTYLMVYCVQWIF 184
+S ++ G+ + +V ++ L + + TR +YL+V C+ W++
Sbjct: 120 VSVFHLLGITRDRVMAVLSPLQYSQTTRKKSYLVVVCI-WVY 160
>SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22)
Length = 237
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 458 VITEIGHIHQYHVSLLHLAHHH 393
++ I H H YH LLH HHH
Sbjct: 164 IVIAIHHHHYYHHHLLHHHHHH 185
>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
Length = 941
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +2
Query: 317 GDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLAALNITTHVLKN 496
GD+ + E N + E QG K LV DG+ D + + E SQL+ VL
Sbjct: 213 GDLMQLENLNHLAEACQG-KVHLVTADGSIDCSDEPEEQENAVSQLIFCEAVTALTVLAT 271
Query: 497 EGTF 508
G +
Sbjct: 272 GGCY 275
>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
Length = 304
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 458 VITEIGHIHQYHVSLLHLAHHH 393
++ I H H YH LLH HHH
Sbjct: 149 IVIAIHHHHYYHHHLLHHHHHH 170
>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 616 IEAFVICEKYNPPEDYVPNMVNPLLDHKYFDLNSDFNS 729
+ F +CEK N EDYV N + L++ Y N+ NS
Sbjct: 162 LNRFRVCEKLNISEDYVKNWLQ-LIEANYHRKNAYHNS 198
>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
Length = 661
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 631 ICEKYNPPEDYVPNM---VNPLLDHKYFDLNSDFNSFTG 738
+ EKYN E + N+ ++ +D YFD+N D SF G
Sbjct: 191 LIEKYNISEKDMRNLFKEISKAIDEGYFDVNYDRWSFAG 229
>SB_37096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 396 SHTTKSALRPWNSSIIAFAVSCLVISP*ICF 304
SH T L+ ++A A +C ++P ICF
Sbjct: 286 SHLTFEELKEAMDIVVAIAYACFAVNPFICF 316
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 198 CLVCAKIHCTQYTIK-YVVFLVNLQKFKCATCTPTFFFSKPVIYISLIF 55
C C K++C +Y +K ++ + KC C + FS P++ S F
Sbjct: 441 CDFCGKVYCRKYVLKIHMRTHTGFKPLKCKFCDKS--FSDPIVNSSGTF 487
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,075,792
Number of Sequences: 59808
Number of extensions: 508400
Number of successful extensions: 1223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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