Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00755
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot... 122 4e-28
At5g01230.2 68418.m00030 FtsJ-like methyltransferase family prot... 93 2e-19
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot... 54 1e-07
At5g13830.1 68418.m01617 FtsJ-like methyltransferase family prot... 40 0.002
At3g14590.1 68416.m01847 C2 domain-containing protein low simila... 32 0.49
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 29 3.4
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR... 28 6.0
At2g05080.1 68415.m00530 hypothetical protein low similarity to ... 28 7.9
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro... 28 7.9
At1g32060.1 68414.m03944 phosphoribulokinase (PRK) / phosphopent... 28 7.9
>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 309
Score = 122 bits (293), Expect = 4e-28
Identities = 57/86 (66%), Positives = 65/86 (75%)
Frame = +2
Query: 260 IVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEY 439
IVA+DLQ MA + GV Q+QGDIT TA +I F G KADLVVCDGAPDVTGLHD+DE+
Sbjct: 81 IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 140
Query: 440 VQSQLLLAALNITTHVLKNEGTFWPK 517
VQSQL+LA L I TH+LK G F K
Sbjct: 141 VQSQLILAGLTIVTHILKEGGKFIAK 166
Score = 93.1 bits (221), Expect = 2e-19
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 40 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 189
MGK S+DKRDIYYR AKEEGWRARSAFKLLQI+EE+NIF GV R VDLCA
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCA 50
Score = 88.2 bits (209), Expect = 5e-18
Identities = 40/62 (64%), Positives = 49/62 (79%)
Frame = +1
Query: 508 LAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNPL 687
+AKIFRGKD SLLY QLK FF VT +KP+SSRNSSIEAF +CE Y+PPE + P ++ L
Sbjct: 164 IAKIFRGKDTSLLYCQLKLFFPTVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPRDLHRL 223
Query: 688 LD 693
L+
Sbjct: 224 LE 225
>At5g01230.2 68418.m00030 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 61
Score = 93.1 bits (221), Expect = 2e-19
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 40 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 189
MGK S+DKRDIYYR AKEEGWRARSAFKLLQI+EE+NIF GV R VDLCA
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCA 50
>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 821
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = +1
Query: 40 MGKTS-KDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 189
MGK K + D YYRLAKE G+R+R+++KLLQ++ +Y++ + +DLCA
Sbjct: 1 MGKVKGKHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCA 51
Score = 36.7 bits (81), Expect = 0.017
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +2
Query: 251 GFKIVAVDLQAMAALPGVKQIQGDITKQETANAI--IEEFQGLKA-DLVVCDGAPDVTGL 421
G ++ +DL + + G + DIT+ E + I + E G+ A +LV+ DG+P+V G
Sbjct: 67 GSLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGSPNVGGA 126
Query: 422 HDIDEYVQSQLLLAALNITTHVLKNEGTFWPK 517
+ Q+ L++ ++ + T L G K
Sbjct: 127 WAQEAMSQNALVIDSVRLATEFLARNGNLVTK 158
>At5g13830.1 68418.m01617 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 224
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 67 DIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDL-CADQA 198
D +YR A+ G+ ARSAFKLLQI ++Y + +DL CA A
Sbjct: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGA 52
>At3g14590.1 68416.m01847 C2 domain-containing protein low
similarity to SP|Q16974 Calcium-dependent protein kinase
C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
profile PF00168: C2 domain
Length = 737
Score = 31.9 bits (69), Expect = 0.49
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 329 KQETANAIIEEFQGLKADLVVCDGAP-DVTGLHDIDEYVQSQLLLAALNITTHVLKNEGT 505
K+ A+A++E + CD P D+ GL D YV+ QL A T +L T
Sbjct: 279 KEPVAHALVEVVEA-------CDVKPSDLNGL--ADPYVKGQL--GAYRFKTKILWK--T 325
Query: 506 FWPKYSEEKMFPCCTHN*NSFLNL 577
PK+ EE P CT + + LN+
Sbjct: 326 LAPKWQEEFKIPICTWDSANILNI 349
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 547 YSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNP 684
Y +L+ K+ S P S R S + + PPE +P++ NP
Sbjct: 1216 YPELQMSIKIQVTSAPTSEREESGYSTPHSKTTPPPESGIPSITNP 1261
>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1103
Score = 28.3 bits (60), Expect = 6.0
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Frame = -2
Query: 737 PVKLLKSEFKSKYL----*SNSGLTIF--GT*SSGGLYFSQITKASMLEFLELLGLDTVT 576
P+K L S FK++YL NS L GT G L + ++ L+ + L L T
Sbjct: 591 PLKRLPSNFKAEYLVELRMENSALEKLWNGTQPLGSLKKMNLRNSNNLKEIPDLSLATNL 650
Query: 575 SLKNCFNCEYSRETSFPLNILAKMYLHS*AHGLLCSMQRVITEI 444
+ NCE PLN + +L+ LLC R EI
Sbjct: 651 EELDLCNCEVLESFPSPLNSESLKFLNL----LLCPRLRNFPEI 690
>At2g05080.1 68415.m00530 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 1238
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +1
Query: 541 LLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNP 684
L Y L + PR RN ++A +C+ + P+ ++ NP
Sbjct: 265 LKYQGLACYLPATFTGGPRYMRNMYLDAMAVCKHFGFPDYFITFTCNP 312
>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
protein
Length = 192
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 536 TSFPLNILAKMYLHS*AHGLLCSMQRVITEIGHIHQYH 423
++F L+ Y S ++ S QR+I E+ HIHQ+H
Sbjct: 102 STFDLDRPGLFYFISGSNQHCTSGQRLIVEVMHIHQHH 139
>At1g32060.1 68414.m03944 phosphoribulokinase (PRK) /
phosphopentokinase nearly identical to SP|P25697
Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)
(Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis
thaliana}
Length = 395
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +1
Query: 523 RGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNPLLDHKY 702
R D L+Y Q+K + V KP + + + E PP+ V ++P+ D +
Sbjct: 123 RANDFDLMYEQVKALKNGIAVEKPIYNHVTGL--LDPPELIQPPKILVIEGLHPMFDERV 180
Query: 703 FDLNSDFNSFTGIN 744
DL DF+ + I+
Sbjct: 181 RDL-LDFSIYLDIS 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,875,734
Number of Sequences: 28952
Number of extensions: 352267
Number of successful extensions: 1039
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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