Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00754
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.)               93   3e-19
SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)                  31   0.87 
SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)                     30   2.6  
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)                   29   4.6  
SB_18947| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +1

Query: 511 GSYSDPAEIQGLAHFVEHMVFMGSEKYPKENEFDAFIKKKGGSDNASTDCE 663
           GS+SDP +I GLAHF+EHMVFMGSEKYP EN FDAFIKK GG+ NA TDCE
Sbjct: 182 GSFSDPDDIPGLAHFLEHMVFMGSEKYPDENSFDAFIKKHGGNSNAFTDCE 232


>SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)
          Length = 472

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 565 YVRRNA--PIPVFLLGRCSCPANTEGAGC*FFFIKVISPCGSV 443
           Y  +N   P P F+  +C+  A  E A C  F +K + P G V
Sbjct: 99  YAAKNCDIPPPAFICAKCNEEAENELADCPEFLVKTVQPLGPV 141


>SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 662

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 343 FFCHSRSTWVRY**CCQTIL*PDSLV*LFIASDLMGSGSTS 221
           F  H   +W+R     QT+L     +  FIASD++GSG  +
Sbjct: 400 FLSHCEKSWMRETEIYQTVLLRHESILGFIASDIIGSGQVT 440


>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
          Length = 218

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/58 (37%), Positives = 27/58 (46%)
 Frame = -1

Query: 796 NSDSIASLSLCKPPSSLAGSRRTG*TYPWHEVNASLVSQSRM*SLRNLSKRYLNRPFS 623
           NSDS  SLS C  P S+   R T   Y      AS  S   +  L +   RY+N+P S
Sbjct: 100 NSDS-DSLSACSSPDSVLRKRVTFSKYALLLAAASENSLQELEHLLDADPRYVNKPSS 156


>SB_18947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 522 RPSRNTGIGAFRRTYGVYG 578
           RPSR+  +  + RTYG+YG
Sbjct: 29  RPSRSYRVSGYERTYGLYG 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,503,474
Number of Sequences: 59808
Number of extensions: 500563
Number of successful extensions: 1105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)