Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00754
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.37 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.86 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.0  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 143 RCPLKTTSFGHGSKCVFDQYDSAR 72
           RCPL+  SFG+  + V  +++SAR
Sbjct: 143 RCPLQFGSFGYTKRDVIYKWNSAR 166


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 513 QLQRPSRNTGIGAFRRTYGVYGK 581
           +L +PSR +  G FRR Y + GK
Sbjct: 540 ELGKPSRISKQGLFRRFYNLLGK 562


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 395 PESDGGKSVQSATSDHHGTT 454
           P+S  G +V S  SD +GTT
Sbjct: 240 PKSVAGLNVSSRRSDMNGTT 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,280
Number of Sequences: 438
Number of extensions: 4470
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)