Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00753
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471    104   1e-23
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528    102   4e-23
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...   101   1e-22
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123...    28   1.1  
03_05_0038 + 20121924-20122080,20123182-20123843                       26   5.8  
08_02_1440 - 27113396-27113418,27113976-27114102                       25   7.7  
07_03_1600 - 28024495-28024509,28024681-28024731,28025083-280253...    25   7.7  
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    25   7.7  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score =  104 bits (249), Expect = 1e-23
 Identities = 47/69 (68%), Positives = 60/69 (86%)
 Frame = -3

Query: 250 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 71
           MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 70  PPGLQVKEV 44
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score =  102 bits (245), Expect = 4e-23
 Identities = 46/69 (66%), Positives = 59/69 (85%)
 Frame = -3

Query: 250 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 71
           MP++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 70  PPGLQVKEV 44
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score =  101 bits (241), Expect = 1e-22
 Identities = 47/78 (60%), Positives = 62/78 (79%)
 Frame = -3

Query: 277 CWLKTIRLNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKE 98
           C + T+    P++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +
Sbjct: 23  CVVATLA-TQPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDAD 81

Query: 97  KAEKLKQSLPPGLQVKEV 44
           KA KLKQSLPPGL V+EV
Sbjct: 82  KANKLKQSLPPGLTVQEV 99


>05_01_0178 -
           1235546-1235756,1235869-1235945,1236194-1236347,
           1237067-1237216,1237363-1237484,1237806-1237910,
           1237986-1238213
          Length = 348

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -3

Query: 256 LNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 89
           L MP +   +   L+  + +   +V ++    N + +V C ++L+  +I++K  AE
Sbjct: 168 LRMPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223


>03_05_0038 + 20121924-20122080,20123182-20123843
          Length = 272

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 291 GPFDSAG*KLFVSTCRVKSKISKTF*LRRGG 199
           GP   A  K+ V+TC ++S  S T  LR GG
Sbjct: 81  GPAPGAATKITVATCGLESGGSTTGGLRNGG 111


>08_02_1440 - 27113396-27113418,27113976-27114102
          Length = 49

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 100 EKAEKLKQSLPPGLQ 56
           E A KLKQ LPPG Q
Sbjct: 25  ENANKLKQFLPPGSQ 39


>07_03_1600 -
           28024495-28024509,28024681-28024731,28025083-28025355,
           28025427-28025554,28025645-28025764,28025856-28025933,
           28025993-28026061,28026183-28026213
          Length = 254

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 117 WSSLTKRRLRNLSRVYLQVSKLK 49
           WS LTK+   N+SRV + ++  K
Sbjct: 77  WSKLTKKVASNVSRVVVSLASFK 99


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 229 IKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVIT 107
           ++  +I+A +     V I   P  VK    C++F Y +V+T
Sbjct: 55  LQRLIIEASQNGTDEVYIHDIPGGVKIFEICAKFCYGMVVT 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,630,689
Number of Sequences: 37544
Number of extensions: 107469
Number of successful extensions: 287
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)