Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00753
(291 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 124 8e-30
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 30 0.24
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 30 0.24
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 30 0.24
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 29 0.42
Z83105-7|CAB05491.1| 432|Caenorhabditis elegans Hypothetical pr... 27 3.0
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical... 27 3.0
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 26 5.2
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 26 5.2
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ... 26 5.2
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 25 6.8
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 25 9.1
U41542-14|ABO16444.1| 331|Caenorhabditis elegans Hsn abnormal m... 25 9.1
U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal m... 25 9.1
U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal m... 25 9.1
CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical ... 25 9.1
>Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical
protein C06B8.8 protein.
Length = 70
Score = 124 bits (300), Expect = 8e-30
Identities = 56/70 (80%), Positives = 65/70 (92%)
Frame = -3
Query: 250 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 71
MP+EIK+IKDFL+KARRKDAKSVKIKKN N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60
Query: 70 PPGLQVKEVK 41
PPG+QVKE+K
Sbjct: 61 PPGIQVKELK 70
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 30.3 bits (65), Expect = 0.24
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 113 DQGVQEP*ASNLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHVETNSFQPALSKG 289
D +P + E++++ LY R + P +L+ K +IF T VE NS A +KG
Sbjct: 1913 DYMFNDPFPESQEINVIENELYEPRVPLLPQKLSYKGQEIFANTNTVERNSKAGAKAKG 1971
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 30.3 bits (65), Expect = 0.24
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 113 DQGVQEP*ASNLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHVETNSFQPALSKG 289
D +P + E++++ LY R + P +L+ K +IF T VE NS A +KG
Sbjct: 1913 DYMFNDPFPESQEINVIENELYEPRVPLLPQKLSYKGQEIFANTNTVERNSKAGAKAKG 1971
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 30.3 bits (65), Expect = 0.24
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 113 DQGVQEP*ASNLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHVETNSFQPALSKG 289
D +P + E++++ LY R + P +L+ K +IF T VE NS A +KG
Sbjct: 1913 DYMFNDPFPESQEINVIENELYEPRVPLLPQKLSYKGQEIFANTNTVERNSKAGAKAKG 1971
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 29.5 bits (63), Expect = 0.42
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 201 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 85
G+ NR++ T+ S+S+ A S P+SS+T R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232
>Z83105-7|CAB05491.1| 432|Caenorhabditis elegans Hypothetical
protein F14H3.7 protein.
Length = 432
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 271 LKTIRLNMPREIKDIKDFLIKARRKDAKSVKI 176
L+TIRL PR ++D+ D + + K AK V I
Sbjct: 221 LETIRLAYPRNLRDVFDVVRTEQWKLAKEVII 252
>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
protein Y75B8A.26 protein.
Length = 1144
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 220 FLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 110
F K+R+ + K K++KN ENV+ R + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 124 YTLVITDKEKAEKLKQSLPPGLQVKEVK 41
+T V+ K EKL + P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 124 YTLVITDKEKAEKLKQSLPPGLQVKEVK 41
+T V+ K EKL + P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420
>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
protein C33E10.6 protein.
Length = 1014
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -3
Query: 163 ENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK*CN*VNEI 17
E+ K K SR L + KEK++ LK+++ L +++ K C NEI
Sbjct: 910 ESNKKKSANSRMSLILKLWMKEKSKGLKKNVTNTLTIEDFKRCLFQNEI 958
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 8 YFFYFINLVTSLYFFNLETWR*TLLKFLSLLFVSDDQGVQEP 133
+FF+F N+ + F+L+ WR + + F S+ Q + P
Sbjct: 938 FFFHFENM--HFFKFSLQIWRHFYFQPIFFQFFSESQAIMIP 977
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 124 YTLVITDKEKAEKLKQSLPP 65
Y + IT K AEKL + +PP
Sbjct: 299 YVMTITGKGPAEKLMKEVPP 318
>U41542-14|ABO16444.1| 331|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform c protein.
Length = 331
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -3
Query: 271 LKTIRLNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKA 92
+ T LN+ + KD + + D ++++ E++KF+V S VI E
Sbjct: 126 INTAALNLAAQQTPSKDSIQSSNISDYDDLEVQTTEEDIKFEVESSDVSPRSVIVKTEPT 185
Query: 91 EK 86
K
Sbjct: 186 FK 187
>U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform a protein.
Length = 390
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -3
Query: 271 LKTIRLNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKA 92
+ T LN+ + KD + + D ++++ E++KF+V S VI E
Sbjct: 185 INTAALNLAAQQTPSKDSIQSSNISDYDDLEVQTTEEDIKFEVESSDVSPRSVIVKTEPT 244
Query: 91 EK 86
K
Sbjct: 245 FK 246
>U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform b protein.
Length = 392
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -3
Query: 271 LKTIRLNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKA 92
+ T LN+ + KD + + D ++++ E++KF+V S VI E
Sbjct: 187 INTAALNLAAQQTPSKDSIQSSNISDYDDLEVQTTEEDIKFEVESSDVSPRSVIVKTEPT 246
Query: 91 EK 86
K
Sbjct: 247 FK 248
>CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical
protein C42C1.1 protein.
Length = 347
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +2
Query: 2 IFYFFYFINLVTSLYFFNL 58
I ++F+FI +S++FF +
Sbjct: 214 IHFYFFFIRFASSIFFFTI 232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,941,855
Number of Sequences: 27780
Number of extensions: 103812
Number of successful extensions: 392
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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