Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00751
         (768 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    26   1.5  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   1.9  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    25   2.6  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    25   2.6  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        24   4.5  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    23   7.9  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   7.9  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 727 RGCCTPPLPRQCCH 686
           +G C  P PR+CCH
Sbjct: 190 QGRCFGPKPRECCH 203


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -2

Query: 716 YAAIAQAVLPLYKNKNKTCNGRRKSI*LTSILKYGD 609
           Y  + QAVLPL KN N  CN  R+SI L  I++  D
Sbjct: 536 YIVLVQAVLPLDKNLN-DCN--RQSI-LGRIIRVTD 567


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
 Frame = +2

Query: 254 IEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAP--DRS 427
           + PA    D+      G+     G S     G     + D DE H  GRK   AP   R 
Sbjct: 614 VPPAGYREDTTGSYKYGKLSSSGGASSTTHSGAPSRSQSDEDEQHSVGRK-GLAPLIQRG 672

Query: 428 YRSGEGKEQIP 460
             S EGK   P
Sbjct: 673 EGSFEGKAMPP 683


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 586 TRKCISLVSPYFNIDVSQIDLRRPLQVLFLFLYN 687
           TR C+  +     +D S   + R +Q L ++LYN
Sbjct: 133 TRLCLPQIFNNILMDFSVEQINRSIQELMIYLYN 166


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 193 QTEAQSFHWCRRHGD 149
           QT +Q+ HW + HGD
Sbjct: 222 QTLSQANHWLKSHGD 236


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 516 FSQFPCASA*WDRSSRCRSGICS 448
           F QF C    W RS  C S +C+
Sbjct: 9   FRQF-CRDIVWLRSCSCHSSVCA 30


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 527 GASSSRSFRVLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILF 399
           GAS  ++  + ++  + V+D     V+F + F +F+ G WI +
Sbjct: 416 GASVIKA-SIPKIKDVNVIDKYSR-VIFPVSFAAFNAGYWIFY 456


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,272
Number of Sequences: 2352
Number of extensions: 15316
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79834176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)