Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00750
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    59   5e-10
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   4.4  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   5.8  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   7.7  

>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 58.8 bits (136), Expect = 5e-10
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +2

Query: 41  VRNYADA-PKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGV 217
           +R YA A  K +++ L+ A   +  Y+K  V Q+D+P+  G  GIL  HVP +  L+PGV
Sbjct: 18  IRGYAQAVQKNEKLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGV 77

Query: 218 VTILENDGKQNKTSY 262
           +++   D   NK+ Y
Sbjct: 78  ISV--TDESSNKSKY 90


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = +2

Query: 32  RLQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRP 211
           R++  N  +    D  A  F     V ++K V++    PS       L  ++    + + 
Sbjct: 415 RVRTMNEVERRIVDGCATFFKTSKYVMHEKMVIEYNQAPSLRRQDIKLTSNMYNRVMTKD 474

Query: 212 --GVVTILENDGKQNKTSYRLAQLQ*MMTPQFR 304
              V+T+LEN  K+N +   +A       PQFR
Sbjct: 475 NISVITLLEN--KENGSRLIVANCHIHWDPQFR 505


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 119 KQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDG 241
           + V+ +++VP  +    I P  VP L  L       LE DG
Sbjct: 427 ESVLPEVNVPPITTFSIIRPSRVPALRFLAAPATRTLERDG 467


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 51  MQMLPKVTKWH*PSLRVIRSFMTNKLSNK 137
           +Q  P + +W   +LR +  F+TNKL NK
Sbjct: 336 LQPCPSLAEWD--ALRKVWLFITNKLLNK 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,420
Number of Sequences: 5004
Number of extensions: 31446
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)