Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00750
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0467 - 18479199-18479543,18481145-18481417                       41   8e-04
11_05_0074 + 18850567-18851095,18851249-18851274,18851353-188516...    29   3.4  
04_01_0542 - 7005972-7007443,7008568-7008766,7008780-7008855,700...    27   7.8  
03_05_0858 + 28309266-28311143                                         27   7.8  

>07_03_0467 - 18479199-18479543,18481145-18481417
          Length = 205

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +2

Query: 35  LQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPG 214
           +Q R    A    ++ + F    K     + V  + VP+ +G  G+LP HV T+A L+PG
Sbjct: 61  MQPRPPTPAAIPSKLTVNFVLPYKSEIANKEVDMVIVPATTGQMGVLPGHVSTIAELKPG 120

Query: 215 VVTILEND 238
           V+++ E +
Sbjct: 121 VLSVHEGN 128



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/48 (41%), Positives = 31/48 (64%)
 Frame = +1

Query: 256 FVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNSAS 399
           FVSSG   V+ +S   ++A EA PL+ ID +A Q+ L++  ++  SAS
Sbjct: 134 FVSSGFAFVHANSIADIVAVEAVPLDQIDPAAVQQGLAEFNAKLGSAS 181


>11_05_0074 +
           18850567-18851095,18851249-18851274,18851353-18851645,
           18851898-18852699,18852874-18853022,18853105-18853393,
           18853479-18853517,18853623-18853661
          Length = 721

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 125 VVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILE-NDGKQNKTSY 262
           ++ Q D   F G    + KH P +A L P VVTI    + +Q   +Y
Sbjct: 533 ILGQHDGKPFLGPTNYIVKHAPEVAFLDPQVVTITNLQNNRQGMVNY 579


>04_01_0542 -
           7005972-7007443,7008568-7008766,7008780-7008855,
           7009615-7009925
          Length = 685

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 265 SGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSE 384
           +G +TV DDS+V+  AEE  P   +  S+ +  ++KA  E
Sbjct: 445 AGLLTVVDDSAVEQQAEEVLPTICV-ASSLETVMNKAPEE 483


>03_05_0858 + 28309266-28311143
          Length = 625

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 167 GILPKHVPTLAVLRPGVVTILENDGKQNKTSY 262
           G L K + T+  +RP +VT++E +   N  S+
Sbjct: 457 GALEKVLGTVHAVRPRIVTVVEQEANHNSGSF 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,536,677
Number of Sequences: 37544
Number of extensions: 192447
Number of successful extensions: 422
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)