Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00750
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9666| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   2e-11

>SB_9666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 29/52 (55%), Positives = 39/52 (75%)
 Frame = +2

Query: 77  MALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILE 232
           M+LTFA+  + FY    V Q+DV + SG+FGILP HVPTL V++PGV+T+ E
Sbjct: 35  MSLTFASPTEGFYRDAAVTQVDVSTTSGSFGILPSHVPTLQVIKPGVLTVYE 86



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 29/49 (59%), Positives = 37/49 (75%)
 Frame = +1

Query: 256 FVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNSASN 402
           FVSSG +TVN DS+VQ+LAEEAHPL+  D  AA + L +AQ E + AS+
Sbjct: 94  FVSSGAVTVNADSTVQILAEEAHPLDRFDVQAANKQLEEAQQELSGASS 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,951,975
Number of Sequences: 59808
Number of extensions: 245232
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)