Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00750
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondria...    42   4e-04
At5g09740.1 68418.m01128 histone acetyltransferase, putative sim...    27   8.7  

>At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondrial
           identical to SP|Q96252 ATP synthase delta' chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile PF02823: ATP synthase,
           Delta/Epsilon chain, beta-sandwich domain
          Length = 203

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 26/35 (74%)
 Frame = +2

Query: 128 VKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILE 232
           V  + +P+ +G  G+LP HVPT+A L+PG++++ E
Sbjct: 90  VDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHE 124



 Score = 35.5 bits (78), Expect = 0.025
 Identities = 18/48 (37%), Positives = 30/48 (62%)
 Frame = +1

Query: 256 FVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNSAS 399
           F+SSG   ++ +S   ++A EA PL+ ID S  Q+ L++ Q +  SA+
Sbjct: 132 FLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASAT 179


>At5g09740.1 68418.m01128 histone acetyltransferase, putative
           similar to histone acetyltransferase [Homo sapiens]
           gi|8317213|gb|AAF72665
          Length = 445

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 179 KHVPTLAVLRPGVVTILENDGKQNK 253
           KH P   + R G +++ E DGK+NK
Sbjct: 228 KHPPGDEIYRSGTLSMFEVDGKKNK 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,561,068
Number of Sequences: 28952
Number of extensions: 161428
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)