Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00749
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.13 
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   2.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   8.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   8.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 243 PSPRAGDEPST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQAPTTLDTANPDS*NVT 422
           PSP     P T    G + P  + +  P+SP+      +G +D +P++L+  + DS +  
Sbjct: 119 PSPGPPSHPYTVISNGYSSPMSSGSYDPYSPN----GKIGREDLSPSSLNGYSADSCDSK 174

Query: 423 RK 428
           +K
Sbjct: 175 KK 176


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -1

Query: 355 SASPQVSGECGEVASAGPGTAQPGRVYVEGSSPARGEGRGRAVRPFRPALPH 200
           S SP+  G  G   +A  G   P  + +EG +         ++  F  ALPH
Sbjct: 26  SNSPEAGGG-GFWLAAASGAPHPAALPIEGCNETGFINSQPSMAEFMTALPH 76


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -1

Query: 355 SASPQVSGECGEVASAGPGTAQPGRVYVEGSSPARGEGRGRAVRPFRPALPH 200
           S SP+  G  G   +A  G   P  + +EG +         ++  F  ALPH
Sbjct: 26  SNSPEAGGG-GFWLAAASGAPHPAALPIEGCNETGFINSQPSMAEFMTALPH 76


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 91  WVSFFVPSATKLPRFRRQL 147
           W  FF  +ATK P F + +
Sbjct: 305 WREFFYCAATKNPNFDKMI 323


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 271 QRRPALAAPCQGPLTPPHHIHL 336
           Q+  +   P QGPLTP  + H+
Sbjct: 176 QKTKSSNRPHQGPLTPILYDHI 197


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 543 SL*CVVPPQPSC 508
           SL CVVPP   C
Sbjct: 196 SLRCVVPPTEDC 207


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 256 LATSPQRRPALAAPCQGPLT 315
           L+ SP RR A + PC    T
Sbjct: 179 LSQSPNRRRASSNPCHNGAT 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,753
Number of Sequences: 336
Number of extensions: 3569
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)