Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00749
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.34
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 5.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.2
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.2
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 25 9.5
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.5
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.9 bits (64), Expect = 0.34
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = +3
Query: 138 PSTESLPSGWLILGXPGESGACGSAGRNGRTARPRPSPRAGD-EPST*TRPGCAVPGPAD 314
PST + GW G P + A G+ NGR PRPS AG P ++PG + G ++
Sbjct: 304 PSTNNRYRGWN--GSP--TPAAGN-NTNGRPVAPRPSAGAGGANPPAASQPG-LLGGSSN 357
Query: 315 ATSPHSPDTCGLALVGPQDQAPTTLDTANPDS*NVTR 425
+ P + T D A T P + R
Sbjct: 358 SAGPIAAATAAGVGADASDAANTGGSFTRPQGARMVR 394
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Frame = -1
Query: 370 SWGPTSASPQVSGECGEVASAGPGTAQPGRVYVEGSSPARGEGRGRAVRPF-------RP 212
S G +A Q S P + QPG +SP A P+ RP
Sbjct: 60 SSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYASPPPSSNYNTAKPPYQTSQFYARP 119
Query: 211 ALPHAPDSPGXPKISHP 161
+AP G P+IS+P
Sbjct: 120 QSSYAPPPSGRPRISYP 136
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 211 PGGTDAQPARGPRRALATSPQRRPALAAPCQGPLTPP 321
P T A P P + P+R P+L+AP P+ PP
Sbjct: 224 PTSTSAPPIP-PSIPSSRPPERVPSLSAPAPPPIPPP 259
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 228 TARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSPDTCGLALVGP 365
TA+ P P E + + P +VP P SP SP + +A P
Sbjct: 1233 TAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASP-SPTSSSMASAAP 1277
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -1
Query: 325 GEVASAGPGTAQPGRVYVEGSSPARGEGRGR 233
G + P P R V G S RG GRGR
Sbjct: 117 GSMLHERPLKVTPKRTNVPGMSRGRGRGRGR 147
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 187 VSPARVAVPGGTDAQPARGPR-RALATSPQRRPALAAPCQGP--LTPP 321
++P R PG + AQPA R +++T P P + P +PP
Sbjct: 880 MAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPP 927
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 406 SGLAVSSVVGAWSWGPTSAS 347
SGL SS V AW+W T S
Sbjct: 54 SGLISSSTVSAWTWPATLLS 73
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 525 EQRIRVMEGSWSPVSVIREIVESGVQEDPFYVMDL 629
E RI + G+ PV+VIR V+ V D + DL
Sbjct: 245 ENRIHSIIGAPQPVTVIRNQVKQTVLADDLVIGDL 279
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 198 ACGSAGRNGRTARPRPSPRAGDE 266
ACG+AG R P+PR G E
Sbjct: 62 ACGTAGHLVRDCPSSPNPRQGAE 84
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 406 SGLAVSSVVGAWSWGPT 356
+GL S+VV +W+W T
Sbjct: 55 TGLVASAVVSSWTWAST 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,099
Number of Sequences: 5004
Number of extensions: 52435
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -