Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00749
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 36 0.038
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 31 0.82
SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_21936| Best HMM Match : Collagen (HMM E-Value=1.1e-07) 31 0.82
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 31 1.1
SB_21937| Best HMM Match : Collagen (HMM E-Value=4.3e-07) 31 1.1
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 30 1.9
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 30 1.9
SB_15585| Best HMM Match : Collagen (HMM E-Value=2.7e-12) 29 3.3
SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 29 3.3
SB_40390| Best HMM Match : BON (HMM E-Value=0.68) 29 4.4
SB_24709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 29 4.4
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) 28 5.8
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 28 5.8
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 28 5.8
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
Length = 1121
Score = 35.5 bits (78), Expect = 0.038
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -1
Query: 358 TSASPQVSGECGEVASAGPGTAQPGRVYVEGSSPARGEGRGRA--VRPFRPALPHAPDSP 185
T S V+ E A+AG + P + +PA G +RP P HA P
Sbjct: 804 TEPSSYVNTEMASPAAAGSSSITPSNLRPTNPTPAHATDGGTPTPLRPTNPTPAHAASKP 863
Query: 184 GXPKISHPLGRLSVDGGI 131
P+ S+P + ++ G+
Sbjct: 864 SNPRPSNPTPKHAMGEGV 881
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 111 KCN*TTKIPPSTESLPSGWLILGXPGESGACGSAGR---NGRTARPRPSPRAG 260
KC K PP P G PGE GA GS G +G +P P+ RAG
Sbjct: 666 KCEACPKPPPGPAGEPGS---PGLPGEDGAIGSRGLPGPSGEPGKPGPAGRAG 715
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/64 (32%), Positives = 24/64 (37%)
Frame = +3
Query: 156 PSGWLILGXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
P G G PG+ G G+ G G P P GD+ C P P A P SP
Sbjct: 630 PPGDSDYGPPGDKGLKGNTGPPGDEGVPGPIGPKGDKCE-----ACPKPPPGPAGEPGSP 684
Query: 336 DTCG 347
G
Sbjct: 685 GLPG 688
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = -1
Query: 346 PQVSGECGEVASAGP-GTAQPGRVYVEGSSPARGEGRGRAVRPFRPALPHAPDSPG 182
P G GE GP GT++PG V P RG A R LP PG
Sbjct: 1078 PGFKGNQGEKGRMGPPGTSEPGNVPGPKGDPGPAGPRGPAGRNGIDGLPGTKGEPG 1133
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 174 LGXPGESGACGSAGRNGRTARPRPSPRAG 260
LG PG G G GR+G P P R G
Sbjct: 893 LGTPGRQGLAGPPGRDGMKGDPGPRGRDG 921
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/68 (33%), Positives = 25/68 (36%)
Frame = +3
Query: 135 PPSTESLPSGWLILGXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPAD 314
PP LP G GE G G G+NG P P G RPG +PGP
Sbjct: 966 PPGPPGLPGR---PGLKGERGRDGLDGQNGLPGIPGPKGDTGPVGPP-GRPG--LPGPVG 1019
Query: 315 ATSPHSPD 338
P D
Sbjct: 1020 KEGPPGED 1027
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADAT-SPHSPDTCGL 350
G PG +G G AGRNG P G+ S + +PG T +P P GL
Sbjct: 1106 GDPGPAGPRGPAGRNGIDGLPGTK---GEPGSLGEKGDAGIPGQRGLTGNPGLPGAQGL 1161
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -1
Query: 346 PQVSGECGEVASAG-PGTAQP-GRVYVEGSSPARGEGRGRAVRPFRPALPHAPDSPGXPK 173
P G G++ S G PG P G ++G A+G+ P P P P PG P
Sbjct: 923 PGEPGARGDIGSRGLPGEDGPRGPPGIQGMKGAKGDA---ITGPTGP--PGPPGLPGRPG 977
Query: 172 ISHPLGRLSVDG 137
+ GR +DG
Sbjct: 978 LKGERGRDGLDG 989
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/53 (37%), Positives = 21/53 (39%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
G PGESGA G G G P P G+ PGP DA P P
Sbjct: 882 GFPGESGANGLPGPPGLAGSPGPRGPNGEPGDPGMDGDKGPPGPVDA-GPRGP 933
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 171 ILGXPGESGACGSAGRNGRTARPRPSPRAG 260
I G PG +G+ G G +G RP PS R G
Sbjct: 999 IPGFPGLTGSSGRDGLDGSPGRPGPSGRIG 1028
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = -1
Query: 361 PTSASPQVSGECGEVASAGPGTAQPGRVYVEGSSPARGEGRGRAVRPFRPALPHAPDSPG 182
P SA ++ G+ + A P PGR V+ + PA G F L PG
Sbjct: 1229 PGSAGARIGGDRRQSGGASP---TPGRPKVDKTPPAGATSEGVLANFFNSLLNKKTGQPG 1285
Query: 181 XPKISHPLGR 152
P P+ R
Sbjct: 1286 TPTRGSPVAR 1295
>SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 31.1 bits (67), Expect = 0.82
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP-----DT 341
G G++GA G G G T P+ GD +T GP T P P DT
Sbjct: 70 GPKGDTGATGPTGPKGDTGATGPNGPKGDTGATGPAGPTGPTGPKGDTGPTDPTGPNGDT 129
Query: 342 CGLALVGPQDQAPTT 386
GP+ T
Sbjct: 130 GATGPTGPKGDTGAT 144
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*T---RPGCAVPGPADATSPHSP--DT 341
G G++GA G G G T P+ GD +T + GPA T P P DT
Sbjct: 58 GPKGDTGATGPTGPKGDTGATGPTGPKGDTGATGPNGPKGDTGATGPAGPTGPTGPKGDT 117
Query: 342 CGLALVGPQDQAPTT 386
GP T
Sbjct: 118 GPTDPTGPNGDTGAT 132
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/63 (30%), Positives = 23/63 (36%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSPDTCGLAL 356
G G +G G G G T P+ G + T + GP D T P DT
Sbjct: 190 GPAGPAGPTGPKGDTGATGPTDPTGPTGPKGPTGPKGEIGATGPTDPTGPKG-DTGATGP 248
Query: 357 VGP 365
GP
Sbjct: 249 TGP 251
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDE----PST*TRP--GCAVPGPADATSPHSP- 335
G G++GA G G G T P+ GD P+ T P GPA T P P
Sbjct: 124 GPNGDTGATGPTGPKGDTGATGPTGPKGDTGATGPTGPTGPKGDTGATGPAGPTGPTGPK 183
Query: 336 -DTCGLALVGP 365
DT GP
Sbjct: 184 GDTGATGPAGP 194
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
G G++GA G G G T P AG T + GPA T P P
Sbjct: 256 GPKGDTGATGPTGPKGDTGATGP---AGPTGPTGPKGDTGATGPAGPTGPTGP 305
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP--DTCGL 350
G G++GA G G G T P G T + GPA T P P DT
Sbjct: 238 GPKGDTGATGPTGPTGPTG---PKGDTGATGPTGPKGDTGATGPAGPTGPTGPKGDTGAT 294
Query: 351 ALVGP 365
GP
Sbjct: 295 GPAGP 299
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDE----PST*TRP--GCAVPGPADATSPHSPD 338
G G++GA G G G T P+ GD P+ T P GP T P D
Sbjct: 4 GPKGDTGATGPTGPKGDTGATGPTGPKGDTGATGPTGPTGPKGDTGATGPTGPTGPKG-D 62
Query: 339 TCGLALVGPQDQAPTT 386
T GP+ T
Sbjct: 63 TGATGPTGPKGDTGAT 78
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDE-PST*TRP--GCAVPGPADATSPHSP 335
G G++GA G AG G T + G P+ T P GP D T P P
Sbjct: 163 GPKGDTGATGPAGPTGPTGPKGDTGATGPAGPAGPTGPKGDTGATGPTDPTGPTGP 218
>SB_21936| Best HMM Match : Collagen (HMM E-Value=1.1e-07)
Length = 195
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 171 ILGXPGESGACGSAGRNGRTARP-RPSPRAGDEPST*TRPGCAVPGPADAT 320
I G PG+ G G +G +GR +P P P+ P +R V GP T
Sbjct: 42 IPGVPGKPGTPGKSGNDGRNGKPGAPGPKGPPGPKG-SRGPKGVQGPPGTT 91
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPG 305
G PG SG GS GRNG P G P RPG PG
Sbjct: 672 GPPGPSGPSGSNGRNGVKGTPGRDGEPG-IPGPDGRPGERGPG 713
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 174 LGXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPG-CAVPGPADATSP 326
+G PGESG+ G GR GR +P A P + G GP T P
Sbjct: 116 VGLPGESGSAGMVGRPGRPGFD-GAPGAPGSPGAEGKVGLTGQTGPRGPTGP 166
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = -1
Query: 334 GECGEVASAGP-GTAQPGRVYVEGSSPARGEGRGRAVRPFRPALPHAPDSPGXPKISHPL 158
G G GP G+ P E P G RP RP AP +PG P +
Sbjct: 93 GPRGSPGLPGPRGSDGPRGQRGEVGLPGESGSAGMVGRPGRPGFDGAPGAPGSPGAEGKV 152
Query: 157 G 155
G
Sbjct: 153 G 153
>SB_21937| Best HMM Match : Collagen (HMM E-Value=4.3e-07)
Length = 232
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARP-RPSPRAGDEPST*TRPGCAVPGPADAT 320
G PG+ G G +G +GR +P P P+ P +R V GP T
Sbjct: 44 GVPGQLGTPGKSGNDGRNGKPGAPGPKGPPGPKG-SRGPKGVQGPPGTT 91
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +3
Query: 171 ILGXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
+ G PG++GA G GRNG TA P P P R + GP P P
Sbjct: 3472 LAGSPGQTGAPGIPGRNG-TAGPPGFPGLKGSPG--ERGLSGIDGPPGDAGPVGP 3523
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 123 TTKIPPSTESLPSGWLILGXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGC-AV 299
+T PST S PS G PG + G + P +P PST + P ++
Sbjct: 492 STSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAPGTPSTP-STPSTPSTPSTPSTPSTPSM 550
Query: 300 PG-PADATSPHSPDT 341
P P+ ++P +P T
Sbjct: 551 PSTPSTPSTPSTPST 565
>SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADAT 320
G PG G G+ GRNG+ P P G + S R V GP T
Sbjct: 47 GKPGTPGKSGNDGRNGKPGAPGPKGPPGPKGS---RGPKGVQGPPGTT 91
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
G PG +G G G G P P P PS PG PGP P+ P
Sbjct: 605 GPPGVNGPPGEIGEIGPAGLPGP-PGPASPPSPPGPPG--PPGPKGPPGPNGP 654
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
G PG +G G G G P P P PS PG PGP P+ P
Sbjct: 775 GPPGINGPPGQVGEMGPPGLPGP-PGPASPPSPPGPPG--PPGPKGPPGPNGP 824
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSPDTCGLAL 356
G PG +G G G G P P P PS PG PGP P P+ C L
Sbjct: 860 GPPGINGPPGQVGEMGPPGLPGP-PGPASPPSP---PG--PPGPPGPKGPPGPNGC---L 910
Query: 357 VGPQDQAP 380
P D P
Sbjct: 911 GPPGDAGP 918
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Frame = +3
Query: 129 KIPPSTESLPSGWLILGXPGESGACGSAGRNGRTARPRPSPRAGD--EPST*TRPGCAVP 302
++PP LP G PG +G G G G P G+ P+ P +P
Sbjct: 121 QMPPGPPGLPGPPGPAGPPGTNGELGPPGDVGPPGNPGGPGLQGNHGNPAGIQGPN-GLP 179
Query: 303 GPADATSPHSP--DTCGLALVGPQ 368
GP P P D L GPQ
Sbjct: 180 GPNGPLGPPGPPGDMGPPGLPGPQ 203
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 135 PPSTESLPSGWLILGXPGESGACGSAGRNG 224
PP + P LG PGESG G+AG G
Sbjct: 642 PPGPKGPPGPNGPLGPPGESGPAGNAGGVG 671
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 184 RVSPARVAVPGGTDAQPARGPRRALATSPQRRP 282
R +PAR G +PA PR LAT+P RP
Sbjct: 221 RPAPARDRAASGPGPKPAVKPRDRLATAPPGRP 253
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPR----PSPRAGDEPST*TRP 287
G GE GA G G G P P PR GD P+ RP
Sbjct: 250 GEAGEHGADGLKGDRGADGLPGEDGIPGPRVGDHPALLARP 290
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 174 LGXPGESGACGSAGRNGRTARP--RPSPRAGDEPST*TRPGCAVPGPAD 314
+G PGE+G G G NG P R P A P R G P A+
Sbjct: 159 VGEPGEAGPSGRNGANGTAGPPGVRGQPGAIGSPGDAGRAGPQGPQGAE 207
>SB_15585| Best HMM Match : Collagen (HMM E-Value=2.7e-12)
Length = 104
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
G G++GA G G G T P AG T + GPA T P P
Sbjct: 37 GPKGDTGATGPTGPKGDTGATGP---AGPTGPTGPKGDTGATGPAGPTGPTGP 86
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +3
Query: 177 GXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSP--DTCGL 350
G G++GA G G G T P G T + GPA T P P DT
Sbjct: 19 GPKGDTGATGPTGPTGPTG---PKGDTGATGPTGPKGDTGATGPAGPTGPTGPKGDTGAT 75
Query: 351 ALVGP 365
GP
Sbjct: 76 GPAGP 80
>SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 205 AVPGGTDAQPARGPRRALATSPQRRP-ALAAPCQGPLTP 318
A P GT A+P + P A P R P ALA P P
Sbjct: 733 AQPAGTSAEPDKQPAEQAAQEPARTPSALAETITSPEPP 771
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = -1
Query: 367 WGPTSASPQVSGECGEVASAGPGTAQPGRVYVEGSSPARGEGRGRAVR 224
W P + SP G G G G GR G RG GRGRA R
Sbjct: 341 WSPVAKSPSRRGR-GRGRGRGRGR---GRGSSRGRGRGRGRGRGRAKR 384
>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
Length = 561
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 235 ARGPRRALATSPQRRPALAAPCQGPLTPP 321
A+ P AL +P RP PC GP P
Sbjct: 112 AKPPATALVPNPLLRPQCPTPCYGPSAQP 140
>SB_24709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 205 AVPGGTDAQPARGPRRALATSPQRRP-ALAAPCQGPLTP 318
A P GT A+P + P A P R P ALA P P
Sbjct: 151 AQPAGTSAEPDKQPAEQAAQEPARTPSALAERITSPEPP 189
>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 854
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 334 GECGEVASAGPGTAQPGRVYVEGSSPARGEGRGRAVRP 221
G+ G ++ T P RV + SSPA GEG R + P
Sbjct: 451 GDTGSARTSASSTCSP-RVPEDVSSPALGEGHARLLYP 487
>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
Length = 1532
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 181 HRVSPARVAVPGGTDAQPARGPRRALATSPQRRPALAAPCQGPLTPPHH 327
H S + A P GT A+PA+ P R + +R + +P + P T P H
Sbjct: 1197 HTDSGSTSAQPAGTSAEPAQEPARTPSALAER---ITSP-EPPATRPKH 1241
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 171 ILGXPGESGACGSAGRNGRTARPRPSPRAG 260
++G PG+ G G AG G P P R G
Sbjct: 204 LVGDPGKKGMAGRAGAMGMRGLPGPPGRRG 233
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 183 PGESGACGSAGRNGRTARPRPSPRAGDEPST*TRP 287
PG++ A + ARPRPS + P T T P
Sbjct: 274 PGQAATPRQAADQDQAARPRPSCKTKPSPKTKTMP 308
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 246 SPRAGDEPST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQAPTTL 389
+P+ G++P+ R CA G ++ H C L VG + AP ++
Sbjct: 2995 APQEGNQPNQEQRWDCASCGCVNSAKSHQCFGCSLDKVGLEKPAPKSM 3042
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.9 bits (59), Expect = 7.6
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = +3
Query: 126 TKIP-PSTESLPSGWLILGXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVP 302
T IP S E + L + G G R RPRP PR P P P
Sbjct: 822 TDIPLESNEVIEPADLSISSQGYRWNRGRGRGRSRYRRPRPRPRRPPPPPPPPPPPPPPP 881
Query: 303 GPADATSPHS-PDTCGLALVGPQDQ 374
P A+S S P + VGP+ +
Sbjct: 882 PPPPASSTGSTPGGDKVPSVGPKTE 906
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +3
Query: 222 GRTARPRPSPRAGDEPST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQAP 380
G +A +P P G+ P PG + P P P P G A P P
Sbjct: 938 GGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPP 990
>SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 494 TWTCFLSLSRARRGPAPRSTVPFP 423
T CFL+L RR P R +P+P
Sbjct: 174 TKICFLNLELTRRNPTRRKFLPYP 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,665,566
Number of Sequences: 59808
Number of extensions: 495021
Number of successful extensions: 1706
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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