Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00749
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.4  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.0  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 237 PRPSPRAGDEPST*TRPGCAVPGPADATSP 326
           P P+PR    PS+ T       G A A  P
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQP 540


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 268 PQRRPALAAPCQGPLTP 318
           P RRP    P QGP  P
Sbjct: 29  PGRRPFPTFPGQGPFNP 45


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 91  WVSFFVPSATKLPRFRR 141
           W  FF  +ATK P F R
Sbjct: 309 WREFFYCAATKNPNFDR 325


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 268 PQRRPALAAPCQGPLTP 318
           P RRP    P QGP  P
Sbjct: 15  PGRRPFPTFPGQGPFNP 31


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 375  PGLGGPLALVHKCQVNVVRWRQRALARRSQ 286
            P +   +ALV    +  +RWR R L  R Q
Sbjct: 1616 PLIVATVALVVAVVIVALRWRSRYLGDRMQ 1645


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 375  PGLGGPLALVHKCQVNVVRWRQRALARRSQ 286
            P +   +ALV    +  +RWR R L  R Q
Sbjct: 1612 PLIVATVALVVAVVIVALRWRSRYLGDRMQ 1641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,980
Number of Sequences: 438
Number of extensions: 4584
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)