Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00749
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    34   0.072
At5g38560.1 68418.m04662 protein kinase family protein contains ...    30   1.5  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    30   1.5  
At2g15340.1 68415.m01754 glycine-rich protein                          29   2.0  
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ...    29   2.7  
At5g40540.1 68418.m04920 protein kinase, putative similar to pro...    29   3.6  
At5g51550.1 68418.m06392 phosphate-responsive 1 family protein s...    28   4.7  
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                28   6.2  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   6.2  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    28   6.2  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    28   6.2  
At4g28365.1 68417.m04060 plastocyanin-like domain-containing pro...    27   8.2  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    27   8.2  
At1g78400.1 68414.m09136 glycoside hydrolase family 28 protein /...    27   8.2  

>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 28/82 (34%), Positives = 34/82 (41%)
 Frame = +3

Query: 135 PPSTESLPSGWLILGXPGESGACGSAGRNGRTARPRPSPRAGDEPST*TRPGCAVPGPAD 314
           PPS+ S+PS       P    + GS G N R A+P P P     P+      CA P P  
Sbjct: 606 PPSSRSIPSPSAPPPPPPPPPSFGSTG-NKRQAQP-PPPPPPPPPTRIPAAKCAPPPPPP 663

Query: 315 ATSPHSPDTCGLALVGPQDQAP 380
             + HS    G   VGP    P
Sbjct: 664 PPTSHS----GSIRVGPPSTPP 681


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
 Frame = +3

Query: 126 TKIPPSTESLPSGWLILGXPGESGACGSAGRNGRTARPRPSPRAGDE---PST*TRPGCA 296
           T  PP+  S P   +++  P  S    +     +T  P P P A      P+T   P   
Sbjct: 78  TSPPPTVASSPPPPVVIASPPPSTPATTPPAPPQTVSPPPPPDASPSPPAPTTTNPPPKP 137

Query: 297 VPGPADATSPHSPDTCGLALVGPQDQAPTTLDTANP 404
            P P   T     +T       P    PTT  +  P
Sbjct: 138 SPSPPGETPSPPGETPSPPKPSPSTPTPTTTTSPPP 173


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 223 DAQPARGPRRALATSPQRRPALAAPCQGPL 312
           DA+   GPRR   TSPQR+  L+   + PL
Sbjct: 205 DAEKDGGPRRPRETSPQRKTGLSPRRRSPL 234


>At2g15340.1 68415.m01754 glycine-rich protein
          Length = 119

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 427 FLVTFQLSGLAVSSVVGAWSWGPTSASPQVSGECG-EVASAGPGTAQPGRVYVEGSSP 257
           FL+   ++ L+ SS+  AWSW  +  +    G  G   +++GPG+  PG     GS+P
Sbjct: 11  FLLVIAIACLS-SSLAEAWSWSSSDGNGWGWGSDGSSTSTSGPGST-PGDSNSGGSNP 66


>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
           weak similarity to Nucleoporin NUP42 (Nuclear pore
           protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
           cerevisiae]; contains Pfam profile  PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 228 TARPRPSPRAGDE--PST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQAPTTLDTA 398
           T +P PS  +G +  PST  +P    PGP  AT+P + +  G +   P         TA
Sbjct: 319 TPQPVPSGPSGFQTNPSTTFKPASFGPGPGFATTPQNNNIFGQSTPTPATNTSQNNQTA 377


>At5g40540.1 68418.m04920 protein kinase, putative similar to
           protein kinase ATN1 [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387
          Length = 353

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 324 PHSPDTCGLALVGPQDQAPTTLDTA 398
           P SP TC L  V  +DQ PT  ++A
Sbjct: 316 PESPGTCSLMTVRDKDQIPTDANSA 340


>At5g51550.1 68418.m06392 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 337

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LVTFQLSGLAVSSVVGAWSWGPTSASP-QVSGECGEVASAGPGTAQPGRV 278
           ++  +++ LA + +V AW  GP   +P +++  C  +   G G +  G++
Sbjct: 250 VIAHEIAELATNPLVNAWYAGPDPVAPVEIADLCEGIYGTGGGGSYTGQM 299


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 228 TARPRPSPRAGDEPST*TRPGCAVPGP---ADATSPHSPDTCGLALVGPQDQAPTTLDTA 398
           T  P  +P     P+  + P  + P P   A   SP +P+  G   V P + APT  D +
Sbjct: 45  TPAPTTTPPPAVSPAPTSSPPSSAPSPSSDAPTASPPAPEGPG---VSPGELAPTPSDAS 101

Query: 399 NP 404
            P
Sbjct: 102 AP 103


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 237 PRPSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
           P PSP +    ST T P  A   P   T+P SP
Sbjct: 11  PSPSPPSPPTNSTTTTPPPAASSPPPTTTPSSP 43



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = +3

Query: 237 PRPSPRAGDE---PST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQAPTTLDTANPD 407
           P PSP        PS+   P    P P  + +P  P     A + P   +PTT   +NP 
Sbjct: 43  PPPSPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSPSAPITPSPPSPTT--PSNPR 100

Query: 408 S 410
           S
Sbjct: 101 S 101


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 243 PSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
           P P A   P+    P   VP PA  T P SP
Sbjct: 105 PPPVATPPPAPLASPPAQVPAPAPTTKPDSP 135


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 243 PSPRAGDEPST*TRPGCAVPGPADATSPHSP 335
           P P A   P+    P   VP PA  T P SP
Sbjct: 105 PPPVATPPPAPLASPPAQVPAPAPTTKPDSP 135


>At4g28365.1 68417.m04060 plastocyanin-like domain-containing
           protein
          Length = 199

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 PSPRAGDEPST*TRPGCAVPGPADATSPHSPDTCGLALV 359
           P P  G EPS  +     VP P  AT+P+S    G  +V
Sbjct: 153 PGPSPGVEPS--SDSNSRVPAPGPATAPNSAGLVGPGMV 189


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
 Frame = +3

Query: 183 PGESGACGSAG--RNGRTARPRPSPRAGDEPST*T--RPGCAVPGPADATSPHSPDTCGL 350
           PG +   G A   ++     P  SP     P + +   P  + P P  +TSP SP +  +
Sbjct: 175 PGSTTPPGGAHSPKSSSAVSPATSPPGSMAPKSGSPVSPTTSPPAPPKSTSPVSPSSAPM 234

Query: 351 ALVGPQDQAPTTLDTANPDS 410
               P   AP +  T  P S
Sbjct: 235 T-SPPAPMAPKSSSTIPPSS 253


>At1g78400.1 68414.m09136 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           exopolygalacturonase GI:311962 from [Arabidopsis
           thaliana]; contains Pfam profile PF00295: Glycosyl
           hydrolases family 28 (polygalacturonases)
          Length = 404

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -1

Query: 313 SAGPGTAQPGR-VYVEGSSPARGEGRGRAVRPFRPALPHAPDSPGXPKISHPLG 155
           SA P  A  GR V+   S  ARG+G+      F  A   A    G P++  P G
Sbjct: 22  SAAPSAALVGRKVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFG 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,307
Number of Sequences: 28952
Number of extensions: 333975
Number of successful extensions: 965
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)