Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00747
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 124 7e-30
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 124 7e-30
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 31 0.065
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 30 0.11
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 1.4
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 4.3
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 4.3
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 24 7.4
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 24 7.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 24 9.8
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 24 9.8
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 24 9.8
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 24 9.8
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 24 9.8
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 124 bits (298), Expect = 7e-30
Identities = 57/87 (65%), Positives = 70/87 (80%)
Frame = +1
Query: 1 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 180
+L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E Q PL
Sbjct: 35 SLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPL 94
Query: 181 VKVDNNKKLGEWAGLCKIDKDGKARKL 261
VKV + K LGEWAGLC +D+DG ARK+
Sbjct: 95 VKVADPKILGEWAGLCVLDRDGNARKV 121
Score = 36.7 bits (81), Expect = 0.001
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 252 KKIVGCSCVVIKDFGEETPALDVL 323
+K+VGCSCV + D+GE++ AL L
Sbjct: 119 RKVVGCSCVAVTDYGEDSVALQTL 142
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 124 bits (298), Expect = 7e-30
Identities = 56/87 (64%), Positives = 70/87 (80%)
Frame = +1
Query: 1 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 180
AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E + PL
Sbjct: 32 ALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESETPL 91
Query: 181 VKVDNNKKLGEWAGLCKIDKDGKARKL 261
+KV + K LGEWAGLC +D+DG ARK+
Sbjct: 92 IKVADPKVLGEWAGLCVLDRDGNARKV 118
Score = 36.3 bits (80), Expect = 0.002
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 252 KKIVGCSCVVIKDFGEETPALDVL 323
+K+VGCSCV + D+GE++ AL L
Sbjct: 116 RKVVGCSCVAVTDYGEDSAALQKL 139
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 31.1 bits (67), Expect = 0.065
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 49 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 210
+GL+ ++ ++A L ++A + D + ALC + +P V N +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 30.3 bits (65), Expect = 0.11
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = +1
Query: 4 LQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLV 183
+ + +K A ++ G+ E KA+ K + L +LA + + LC ++ +P +
Sbjct: 41 MMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYL 100
Query: 184 KVDNNKKLGE 213
+ + LGE
Sbjct: 101 YTVSKELLGE 110
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.6 bits (56), Expect = 1.4
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +1
Query: 136 KKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKLSAAPVLSSKISARKLQR 312
K+ QA+ E + N K G+ A K K KA KLS A + ++I+ARK+++
Sbjct: 507 KESKQAVKEETSVKNSPKGKNTKNGK-AEKEKPGKKSKAPKLSKAEQIRAEIAARKVEK 564
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 107 WLRTVMKPHTRNLFRLCATNIRFHWSRLTTTKSLE 211
++ +V P L+RLC++ R W ++SL+
Sbjct: 220 FILSVFHPDAARLYRLCSSLKRICWELYDPSRSLD 254
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 187 VDNNKKLGEWAGLCKIDKDGKARKLSAAPVLSSKISARKLQRWMCSR 327
VD + LG G + + +++ +P++ K S+R Q+ +CS+
Sbjct: 921 VDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQ 967
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 229 KIDKDGKARKLSAAPVLSSKISARKLQRWMCSRTTSSRRAN 351
K K + + L S ++ R+LQ W ++ S RR+N
Sbjct: 54 KTPKPSLIERQELSKKLKSSMTPRELQIWFQNKRQSLRRSN 94
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 28 LIHGGLVHGLHEAAKALDKRQAVLCVLAEN-CDE 126
L+H GL+H L + K +LA N CDE
Sbjct: 896 LLHSGLIHNLLLSLKKFGSSSLRTFLLAMNTCDE 929
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 23.8 bits (49), Expect = 9.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 136 CMRLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAV 2
C+ S +HIV A L +D +DH G+ L ++P V
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVV 561
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 307 GVSSPKSLMTTQEQPTIFLPCHPCQSCRDQPI 212
GVS+P SL+ + F HP D +
Sbjct: 125 GVSTPSSLLFSGSDALTFSQAHPSSEVADDTV 156
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 23.8 bits (49), Expect = 9.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 136 CMRLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAV 2
C+ S +HIV A L +D +DH G+ L ++P V
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVV 561
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 105 NT*YCLPLVKSFSGFVKTVHKT 40
N YCLP +F FVK + +T
Sbjct: 90 NRLYCLPFCNAFIEFVKKLTET 111
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 23.8 bits (49), Expect = 9.8
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -2
Query: 142 VSCMRLHHSSQPKH 101
++C ++H+ S PKH
Sbjct: 72 IACFKIHYVSSPKH 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,772
Number of Sequences: 5004
Number of extensions: 28390
Number of successful extensions: 99
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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