Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00747
(395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 117 4e-27
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.024
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 1.2
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 1.2
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 1.2
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 1.2
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 1.6
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 28 2.1
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 2.1
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 2.1
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 2.1
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p... 27 3.7
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein. 27 3.7
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 6.4
Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical pr... 27 6.4
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 6.4
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 6.4
Z84574-2|CAB06542.1| 488|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical pr... 26 8.5
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 117 bits (281), Expect = 4e-27
Identities = 55/87 (63%), Positives = 65/87 (74%)
Frame = +1
Query: 1 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 180
AL+ VL+ A GL GLHE KALDKR+A CVLAENCDE Y KLV+ LC EHQIPL
Sbjct: 25 ALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPL 84
Query: 181 VKVDNNKKLGEWAGLCKIDKDGKARKL 261
+KV + K +GE+ GLCK DK+GKARK+
Sbjct: 85 IKVADKKIIGEYCGLCKYDKEGKARKV 111
Score = 30.3 bits (65), Expect = 0.52
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 246 QGKKIVGCSCVVIKDFGEETPALDVLKDY 332
+ +K+VGCS V+ ++G E +L DY
Sbjct: 107 KARKVVGCSSAVVTNWGNEEQGRAILTDY 135
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 34.7 bits (76), Expect = 0.024
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 43 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 210
L G+ + K L + + +C+LA N + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 138 LVCGFITVLSQNT*YCLPLVKSFSGFVK 55
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 138 LVCGFITVLSQNT*YCLPLVKSFSGFVK 55
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 49 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 210
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 49 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 210
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 160 NEHQIPLVKVDNNKKLGEWAGLCK 231
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Frame = -2
Query: 235 QSCRDQPILQAFCCCQP*PV----ESDVRC--TEPEQVSCMRLHHSSQPKHIVLLASC 80
QSC P +Q C CQ P E+ C T P Q SC Q ++V + C
Sbjct: 27 QSCGCAPKVQPSCSCQQTPYTQPQETSCSCQNTAPVQTSCSCAQPVQQQTYLVPTSQC 84
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 243 WQGKKIVGCSCVVIKDFGEETPALDVLKD 329
W+ KK+ + ++DF EETP + +D
Sbjct: 495 WKEKKVEAAKSIKLEDFKEETPETEDFED 523
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 61 EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 225
E KALD+ Q ++ VL + CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 37 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 144
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
protein F43G9.6 protein.
Length = 2034
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 112 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKLSAAPVLSSKI 291
ENC + K+ ++ + P +D++ K W+G ID K R S ++ I
Sbjct: 216 ENC---GFLKVTLSVYRIDESPPTLIDDDGKEQIWSGAHLIDYTLKIRVFSVEQLIRQMI 272
Query: 292 SARKLQR 312
+ RK+++
Sbjct: 273 NERKIKK 279
>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
Length = 2034
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 112 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKLSAAPVLSSKI 291
ENC + K+ ++ + P +D++ K W+G ID K R S ++ I
Sbjct: 216 ENC---GFLKVTLSVYRIDESPPTLIDDDGKEQIWSGAHLIDYTLKIRVFSVEQLIRQMI 272
Query: 292 SARKLQR 312
+ RK+++
Sbjct: 273 NERKIKK 279
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 118 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 243
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical
protein C33A12.1 protein.
Length = 150
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 94 VLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNN-KKLGEWAGLCKIDK 240
+L L + +AAY+K +A+ + ++ LV+ +N+ KKL E G+ +I++
Sbjct: 65 ILRALEQIPRDAAYRKYTEAVVKQ-RLALVQAENDIKKLEEKIGMGQIEE 113
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 118 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 243
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 118 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 243
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>Z84574-2|CAB06542.1| 488|Caenorhabditis elegans Hypothetical
protein F33E2.3 protein.
Length = 488
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +2
Query: 173 FHWSRLTTTKSLENGLVSARLTRMARQENCRLLLCCHQRFRRGNSSVGC 319
F WS TT G+ A L MA ENC + Q + + V C
Sbjct: 216 FEWSDGFTTGKAALGIDIAMLDGMAGGENCLTIRYSPQNVEKPLNDVSC 264
>Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical
protein F27E5.3 protein.
Length = 490
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 208 GEWAGLCKIDKDGKARKLSAAPVLSSKISARKLQRWMCSRTTSSR 342
GEW DGK K + SS R + W+ T S+R
Sbjct: 402 GEWKYYYASGSDGKIGKALSTTTKSSTSHRRSTRSWLFDSTGSNR 446
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,788,387
Number of Sequences: 27780
Number of extensions: 172076
Number of successful extensions: 567
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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