Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00747
(395 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 108 2e-24
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 108 2e-24
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 108 2e-24
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 105 1e-23
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 105 1e-23
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 32 0.12
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 31 0.28
At1g51920.1 68414.m05853 expressed protein 31 0.37
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 30 0.49
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 30 0.49
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 29 1.1
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 29 1.1
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 28 2.6
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 27 3.4
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 27 3.4
At1g77110.1 68414.m08981 auxin transport protein, putative simil... 27 4.5
At1g58350.1 68414.m06637 expressed protein contains Pfam profile... 27 4.5
At1g29160.1 68414.m03568 Dof-type zinc finger domain-containing ... 27 6.0
At5g01180.1 68418.m00022 proton-dependent oligopeptide transport... 26 7.9
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 26 7.9
At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2 (GI:17... 26 7.9
At1g05410.1 68414.m00549 expressed protein 26 7.9
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 108 bits (259), Expect = 2e-24
Identities = 50/96 (52%), Positives = 68/96 (70%)
Frame = +1
Query: 1 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 180
AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +H I L
Sbjct: 30 ALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKL 89
Query: 181 VKVDNNKKLGEWAGLCKIDKDGKARKLSAAPVLSSK 288
+ V + K LGEWAGLCKID +G ARK+ L K
Sbjct: 90 LTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIK 125
Score = 48.8 bits (111), Expect = 1e-06
Identities = 19/28 (67%), Positives = 26/28 (92%)
Frame = +3
Query: 252 KKIVGCSCVVIKDFGEETPALDVLKDYL 335
+K+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 114 RKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 108 bits (259), Expect = 2e-24
Identities = 50/96 (52%), Positives = 68/96 (70%)
Frame = +1
Query: 1 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 180
AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +H I L
Sbjct: 30 ALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKL 89
Query: 181 VKVDNNKKLGEWAGLCKIDKDGKARKLSAAPVLSSK 288
+ V + K LGEWAGLCKID +G ARK+ L K
Sbjct: 90 LTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIK 125
Score = 48.8 bits (111), Expect = 1e-06
Identities = 19/28 (67%), Positives = 26/28 (92%)
Frame = +3
Query: 252 KKIVGCSCVVIKDFGEETPALDVLKDYL 335
+K+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 114 RKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 108 bits (259), Expect = 2e-24
Identities = 50/96 (52%), Positives = 68/96 (70%)
Frame = +1
Query: 1 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 180
AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +H I L
Sbjct: 30 ALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKL 89
Query: 181 VKVDNNKKLGEWAGLCKIDKDGKARKLSAAPVLSSK 288
+ V + K LGEWAGLCKID +G ARK+ L K
Sbjct: 90 LTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIK 125
Score = 48.8 bits (111), Expect = 1e-06
Identities = 19/28 (67%), Positives = 26/28 (92%)
Frame = +3
Query: 252 KKIVGCSCVVIKDFGEETPALDVLKDYL 335
+K+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 114 RKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 105 bits (252), Expect = 1e-23
Identities = 50/96 (52%), Positives = 67/96 (69%)
Frame = +1
Query: 1 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 180
AL+ L+ A +GG+V GLHE AK ++KR A L VLAE+C++ Y KLV+ALC +H++ L
Sbjct: 30 ALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRL 89
Query: 181 VKVDNNKKLGEWAGLCKIDKDGKARKLSAAPVLSSK 288
+ V + K LGEWAGLCKID +G ARK+ L K
Sbjct: 90 LTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVK 125
Score = 45.2 bits (102), Expect = 2e-05
Identities = 16/28 (57%), Positives = 24/28 (85%)
Frame = +3
Query: 252 KKIVGCSCVVIKDFGEETPALDVLKDYL 335
+K+VGCSC+V+KDFGEET AL ++ ++
Sbjct: 114 RKVVGCSCLVVKDFGEETTALSIVNKHI 141
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 105 bits (252), Expect = 1e-23
Identities = 50/96 (52%), Positives = 67/96 (69%)
Frame = +1
Query: 1 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 180
AL+ L+ A +GG+V GLHE AK ++KR A L VLAE+C++ Y KLV+ALC +H++ L
Sbjct: 30 ALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRL 89
Query: 181 VKVDNNKKLGEWAGLCKIDKDGKARKLSAAPVLSSK 288
+ V + K LGEWAGLCKID +G ARK+ L K
Sbjct: 90 LTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVK 125
Score = 45.2 bits (102), Expect = 2e-05
Identities = 16/28 (57%), Positives = 24/28 (85%)
Frame = +3
Query: 252 KKIVGCSCVVIKDFGEETPALDVLKDYL 335
+K+VGCSC+V+KDFGEET AL ++ ++
Sbjct: 114 RKVVGCSCLVVKDFGEETTALSIVNKHI 141
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.3 bits (70), Expect = 0.12
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 43 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 222
L G+ E K++ + Q LCV+A N + LC E +P V V + + L + AG
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQ-AG 109
Query: 223 LCK 231
K
Sbjct: 110 ATK 112
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 31.1 bits (67), Expect = 0.28
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 16 LKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDN 195
LKT ++HG + G + ++ R L L++N + V L N H + + + +
Sbjct: 1008 LKTLILHGNNMEGTFPMKELINLRNLELLDLSKN----QFVGPVPDLANFHNLQGLDMSD 1063
Query: 196 NKKLGEWAGLCKI 234
NK G GLC++
Sbjct: 1064 NKFSGSNKGLCQL 1076
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -2
Query: 253 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQP 107
+P P S R PI A CC+P P+ S RC V+ HHS P
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRCCASPIVT-QTHHHSQSP 78
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 49 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 210
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 49 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 210
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +1
Query: 13 VLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVD 192
V+K G L +GL + K + + + L E+ ++ +KK+ + P+++
Sbjct: 1364 VVKLVAEDGSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQ 1421
Query: 193 NNKKLGEWAGLCKIDKDGKARKL 261
NKK E KID+ GK +++
Sbjct: 1422 GNKKNAEEEMQDKIDRRGKNQEI 1444
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 76 LDKRQAVLCVLAENCDEAAYKKLVQALCNE 165
L RQA++C L+E+C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = -2
Query: 247 CHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQPKHIVLLASCQEL* 68
C C+ C+ QP C CQ E+ C V C R +H C L
Sbjct: 203 CPVCRYCQQQPENSVCCVCQ--TTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSL- 259
Query: 67 RLREDRAQDHHG 32
L R D+ G
Sbjct: 260 ELETQRVWDYAG 271
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 100 IVLLASCQEL*RLREDRAQDHHGLKLSLAP 11
+ LLASC + +LRE+RA +G L P
Sbjct: 18 VPLLASCTKEKQLREERASSINGFAAELTP 47
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 299 GNSSVGCAQGLPQVVELILRCNANPY 376
G SS+ C G ++ +++ N NPY
Sbjct: 233 GVSSINCGDGFSGIIRIVVLPNPNPY 258
>At1g77110.1 68414.m08981 auxin transport protein, putative similar
to auxin transport protein EIR1 GI:3377507 from
[Arabidopsis thaliana]
Length = 570
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -3
Query: 231 LAETSPFSKLFVVVNLDQWNLMFVAQSLNKFLVCGFITVLSQNT*YCLPLVKSFSG 64
LA+T SK+FV V L W + F A L+ + I L +PL+++ G
Sbjct: 73 LADT--LSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYG 126
>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
PF05057: Protein of unknown function (DUF676);
supporting cDNA gi|6520166|dbj|AB028199.1|
Length = 794
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 107 WLRTVMKPHTRNLFRLCATNIRFHWSRL 190
WL + K H +F L T + + W+ L
Sbjct: 327 WLHELSKDHLSRIFHLLGTQLHYLWNTL 354
>At1g29160.1 68414.m03568 Dof-type zinc finger domain-containing
protein similar to ascorbate oxidase promoter-binding
protein GB:D45066 GI:853689 from [Cucurbita maxima]
Length = 175
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 304 VSSPKSLMTTQEQPTIFLPCHPCQS 230
V SP S +T +++P +PC C+S
Sbjct: 45 VRSPSSDLTAEKRPDKIIPCPRCKS 69
>At5g01180.1 68418.m00022 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 570
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 112 ENCDEAAYKKLVQALCN--EHQIPLVKVDNNKKLGEWAGLC 228
E C+ AY + L N E Q+ + V +K + W+G C
Sbjct: 39 ECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTC 79
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 213 MGWSLQD*QGWQGKKIVGCSCVVIKDFG 296
M WS++ G K V CS VIK FG
Sbjct: 993 MRWSIESTNGIPEKSSVVCSSDVIKTFG 1020
>At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2
(GI:1770390) [Homo sapiens]; similar to ataxin-2
(GI:3005020) [Mus musculus]
Length = 587
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 295 PKSLMTTQEQPTIFLPCHPCQ 233
P+ +M TQ++P +F+P P Q
Sbjct: 556 PQPMMVTQQRPILFMPPTPYQ 576
>At1g05410.1 68414.m00549 expressed protein
Length = 471
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 310 AGVSSPKSLMTTQEQPTIFLPCHPCQSCRDQPILQAFCCC 191
AG +SLM E T LP PC C + CCC
Sbjct: 152 AGNEKCRSLMPQCEAET--LPAMPCDICCGERKFCVDCCC 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,316,461
Number of Sequences: 28952
Number of extensions: 155332
Number of successful extensions: 522
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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