Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00746
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    28   1.1  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    27   2.6  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   4.5  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    25   7.8  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 304 QDIQSIAIVVSTVSGPVPFFVYIVHHIAFGCSTTKSRGRELIDIFDELDLCILNT 140
           + I S  I +  ++ P P + + +H     C         L D  DELD  +LN+
Sbjct: 177 ESIWSAGIAIPEIAHP-PSYDHRLHQSLLSCFLVVLLSNTLYDSIDELDFSVLNS 230


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 469 IDLCLLNETWLKKSSPSVNITGYNYIGKNAQNEHGGVGI 353
           +D C  N  + K  SP+V   G + +G ++ + H  + I
Sbjct: 184 VDTCQANSLYTKIYSPNVLAIGSSEVGTSSYSHHADIDI 222


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 358 GILIRNTLQYKTIKTAFYQDIQSIAIVVSTVSGPVPFF 245
           GILI+    YK +     +D   +   V T    +PFF
Sbjct: 507 GILIQKDANYKLMSAEDLRDFSDLTTTVLTQKQVIPFF 544


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 644 VKTIVMIANSNSAKTMTHIKDILKQNLTL*WI 549
           V ++++ A      T T IKD ++++ T+ WI
Sbjct: 158 VDSLIVYATQELENTETQIKDTIRKHPTIDWI 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,527
Number of Sequences: 5004
Number of extensions: 62014
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)