Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00746
(695 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 55 1e-07
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 54 2e-07
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 45 1e-04
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 45 1e-04
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 45 1e-04
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 42 8e-04
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 41 0.001
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 38 0.013
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 36 0.040
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 36 0.069
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 33 0.28
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 33 0.28
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 33 0.28
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 31 1.1
AY094860-1|AAM11213.1| 439|Drosophila melanogaster RE19693p pro... 29 8.0
AE014297-2413|AAF55472.3| 439|Drosophila melanogaster CG17802-P... 29 8.0
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 54.8 bits (126), Expect = 1e-07
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = -2
Query: 220 FGCSTTKSRGRELIDIFDELDLCILNTGSATTIQRPGFNSSAIDVTCVSPVLAPLCEWKV 41
+G T +RG+++ + E L +LN GS T + + ID++ +SP +A +C W +
Sbjct: 143 WGSPRTNTRGKKIETVILENSLIVLNDGSPTHLSTHN-TFTHIDISLISPQIAHMCSWSI 201
Query: 40 GDDPHGSYHYP 8
D+ HGS H+P
Sbjct: 202 SDNLHGSDHFP 212
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 54.0 bits (124), Expect = 2e-07
Identities = 28/74 (37%), Positives = 39/74 (52%)
Frame = -2
Query: 229 HIAFGCSTTKSRGRELIDIFDELDLCILNTGSATTIQRPGFNSSAIDVTCVSPVLAPLCE 50
H +G TT RG+ D + L +LN S T + ID+T SP+LAP +
Sbjct: 136 HHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHN-TYTHIDLTLCSPILAPHAK 194
Query: 49 WKVGDDPHGSYHYP 8
WK+ +D HGS H+P
Sbjct: 195 WKILNDLHGSDHFP 208
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 44.8 bits (101), Expect = 1e-04
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = -2
Query: 523 SKHKQKKWLLKTILKDNSIDLCLLNETWLKKSSPSVNITGYNYIGKNAQN--EHGGVGIL 350
S+H Q+ L + + +ID+ LL+ET L + + +I GY + G N + HGG GIL
Sbjct: 15 SRHTQE---LTQFIYEKNIDVMLLSETHLTNKN-NFHIPGYLFYGTNHPDGKAHGGTGIL 70
Query: 349 IRNTLQYKTIKTAFYQDIQSIAIVVSTVSG 260
IRN +++ + +QS +I + +G
Sbjct: 71 IRNRIKHHHLNNFDKNYLQSTSIALQLNNG 100
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 44.8 bits (101), Expect = 1e-04
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = -2
Query: 514 KQKKWLLKTILKDNSIDLCLLNETWLKKSSPSVNITGYN-YIGKNAQNEHGGVGILIRNT 338
+ K+ L L++N I + L+NETWL S NI Y Y ++ GGV I + NT
Sbjct: 23 RNKRIELIKFLENNHIHIALINETWLTHSD-RFNIPEYTIYRNDRKESRGGGVAIAVSNT 81
Query: 337 LQYKTIKTAFYQDIQSIAIVVSTVS 263
L ++ I I+++ I ++T S
Sbjct: 82 LIHEQIPCIKSHVIENVGIQINTDS 106
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 44.8 bits (101), Expect = 1e-04
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = -2
Query: 523 SKHKQKKWLLKTILKDNSIDLCLLNETWLKKSSPSVNITGYNYIGKNAQN--EHGGVGIL 350
S+H Q+ L + + +ID+ LL+ET L + + +I GY + G N + HGG GIL
Sbjct: 15 SRHTQE---LTQFIYEKNIDVMLLSETHLTNKN-NFHIPGYLFYGTNHPDGKAHGGTGIL 70
Query: 349 IRNTLQYKTIKTAFYQDIQSIAIVVSTVSG 260
IRN +++ + +QS +I + +G
Sbjct: 71 IRNRIKHHHLNNFDKNYLQSTSIALQLNNG 100
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 41.9 bits (94), Expect = 8e-04
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = -2
Query: 220 FGCSTTKSRGRELIDIFDELDLCILNTGSATTIQRPGFNSSAIDVTCVSPVLAPLCEWKV 41
+G + +RGR +ID + LDL +LN G T +S IDVT VS VL W V
Sbjct: 133 WGSRISNTRGRAVIDAMNLLDLVLLNDGFKPTFNNDR-GTSFIDVTFVSRVLVAGSNWMV 191
Query: 40 GDD 32
+D
Sbjct: 192 HED 194
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = -2
Query: 511 QKKWLLKTILKDNSIDLCLLNETWLKKSSPSVNITGYNYIGKNAQN--EHGGVGILIRNT 338
Q+K L L + ID+ LL+ET L S + I Y++ G N + HGG ILIRN
Sbjct: 16 QRKLELAQFLHEKHIDVMLLSETHLT-SKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNR 74
Query: 337 LQYKTIKTAFYQDIQSIAI 281
+++ K +Q+ +I
Sbjct: 75 MKHHFYKEFAENHLQATSI 93
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 37.9 bits (84), Expect = 0.013
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -2
Query: 496 LKTILKDNSIDLCLLNETWLKKS-SPSV-NITGYNYIGKNAQNEHGGVGILIRNTLQYKT 323
++ ++ + ID+ LL+ET K + +P + Y + N GG ILI+N+L +
Sbjct: 21 VECFVRRHEIDVLLLSETHCKGAETPKLFGFVAYTANDPSGGNAKGGAAILIKNSLAHFP 80
Query: 322 IKTAFYQDIQSIAIVVSTVSGPVPF 248
+ +Q V+ T GP+ F
Sbjct: 81 LTPIATAKVQLAPAVIETALGPISF 105
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 36.3 bits (80), Expect = 0.040
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = -2
Query: 496 LKTILKDNSIDLCLLNETWLKKSSPSVNITGY-NYIGKN-AQNEHGGVGILIRNTLQYKT 323
LK + + + ++ ET L +S + + GY Y+ +N A ++ GGV ++ ++L++
Sbjct: 39 LKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPASSKRGGVATIVNSSLRHMA 98
Query: 322 IKTAFYQDIQSIAIVV 275
++ + IQS IV+
Sbjct: 99 LEPIEKECIQSAPIVL 114
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 35.5 bits (78), Expect = 0.069
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = -2
Query: 496 LKTILKDNSIDLCLLNETWLKKSSPSVNITGY-NYIGKN-AQNEHGGVGILIRNTLQYKT 323
LK + + + ++ ET L +S + + GY Y+ +N ++ GGV ++ +++++
Sbjct: 27 LKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMA 86
Query: 322 IKTAFYQDIQSIAIVV 275
+K + IQS IV+
Sbjct: 87 LKPIEKECIQSAPIVL 102
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.5 bits (73), Expect = 0.28
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -2
Query: 496 LKTILKDNSIDLCLLNETWLKKSSPSVNITGY-NYIGKN-AQNEHGGVGILIRNTLQYKT 323
LK + + + ++ ET L S + + GY Y+ +N ++ GGV ++ +++++
Sbjct: 27 LKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMA 86
Query: 322 IKTAFYQDIQSIAIVV 275
++ + IQS IV+
Sbjct: 87 LEPIEKECIQSAPIVL 102
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.5 bits (73), Expect = 0.28
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -2
Query: 496 LKTILKDNSIDLCLLNETWLKKSSPSVNITGY-NYIGKN-AQNEHGGVGILIRNTLQYKT 323
LK + + + ++ ET L S + + GY Y+ +N ++ GGV ++ +++++
Sbjct: 27 LKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMA 86
Query: 322 IKTAFYQDIQSIAIVV 275
++ + IQS IV+
Sbjct: 87 LEPIEKECIQSAPIVL 102
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.5 bits (73), Expect = 0.28
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -2
Query: 496 LKTILKDNSIDLCLLNETWLKKSSPSVNITGY-NYIGKN-AQNEHGGVGILIRNTLQYKT 323
LK + + + ++ ET L S + + GY Y+ +N ++ GGV ++ +++++
Sbjct: 27 LKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMA 86
Query: 322 IKTAFYQDIQSIAIVV 275
++ + IQS IV+
Sbjct: 87 LEPIEKECIQSAPIVL 102
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = -2
Query: 457 LLNETWLKKSSPSVNITGY-NYIGKN-AQNEHGGVGILIRNTLQYKTIKTAFYQDIQSIA 284
++ ET L S + + GY Y+ +N ++ GGV ++ +++++ ++ + IQS
Sbjct: 2 IVTETRLDNKSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALEPIEKECIQSAP 61
Query: 283 IVV 275
IV+
Sbjct: 62 IVL 64
>AY094860-1|AAM11213.1| 439|Drosophila melanogaster RE19693p
protein.
Length = 439
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 401 QLHWKKCTKRAWRCRYIDKKYSSIQNYQNS 312
++H K T + ++C Y DK+Y S NYQ +
Sbjct: 358 RVHRNKKTPKNFKCNYCDKRYES--NYQRA 385
>AE014297-2413|AAF55472.3| 439|Drosophila melanogaster CG17802-PA
protein.
Length = 439
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 401 QLHWKKCTKRAWRCRYIDKKYSSIQNYQNS 312
++H K T + ++C Y DK+Y S NYQ +
Sbjct: 358 RVHRNKKTPKNFKCNYCDKRYES--NYQRA 385
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,050,168
Number of Sequences: 53049
Number of extensions: 609250
Number of successful extensions: 1432
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -