Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00746
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    29   4.2  
U41543-7|AAB37026.1|  284|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF025468-4|AAB71045.1|  449|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF016677-5|AAB66143.1|  128|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical
           protein ZK1240.3 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 362 CRYIDKKYSSI-QNYQNSILS-GYSKYRYCSVDSIRTSSILCVYC 234
           C    K+YS+I QN+   IL  G+S  + C+   I  S I C +C
Sbjct: 6   CEICCKEYSNIDQNHSPKILKCGHSICQICAAKLITNSCIYCPFC 50


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 385 NAQNEHGGVGILIRNTLQYKTIKTAFYQDIQS-IAIVVS 272
           +A  +H   G+L+   L  K + T+F++  QS I +VVS
Sbjct: 335 SASQQHAEFGVLVEKQLGRKDVVTSFWRSAQSAIEVVVS 373


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 342 ILFNTKLS-KQHFIRIFKVSLL*CRQYQDQFHSLC 241
           IL ++KL+ K H  +I  ++LL C+Q    F SLC
Sbjct: 200 ILTDSKLTFKPHIKKIVSLALLRCKQLLKSFKSLC 234


>U41543-7|AAB37026.1|  284|Caenorhabditis elegans Hypothetical
           protein F46H5.5 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 454 LNETWLKKSSPSVNITGYNYIGKNAQNEHGGVGILIRNTL 335
           LN+T L K +   N+TG++Y G  A  +   +G L  N +
Sbjct: 231 LNDTELMKQNTGFNLTGFDYQGNTASRKE-RIGNLNENDI 269


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
           protein C27A7.4 protein.
          Length = 1403

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 454 LNETWLKKSSPSVNITGYNYIGKNAQNEHGGVGIL--IRNTLQYKTIK 317
           +N  W+  ++ +  I  YN   K+AQ EH    I+  ++N  ++ TI+
Sbjct: 476 VNRCWMAVATTNGFIRIYNLSAKDAQQEHNSKYIIENVKNFYKFHTIR 523


>Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical
           protein C08H9.6 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 227 MVDNIHKEWNWS*YCRHYNSDTLNILIKCCFDSFVLKSISYQYTYTAM 370
           M+ +I  +W +  +C+ +   TL +LI C   ++ L  I+Y+Y+   M
Sbjct: 1   MISDITVKWKY--FCKIFLLITL-VLITCAMVAYGLSKINYEYSSKLM 45


>AF025468-4|AAB71045.1|  449|Caenorhabditis elegans Hypothetical
           protein T27A1.5 protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 349 IRNTLQYKTIKTAFYQDIQSIAIVVSTVSGPVPFFV 242
           I++TL     +T FYQ I+ + ++   VS P+ F+V
Sbjct: 298 IKDTLTLNLPQTPFYQAIKVMFVLCILVSYPLQFYV 333


>AF016677-5|AAB66143.1|  128|Caenorhabditis elegans Hypothetical
           protein ZK1240.6 protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 368 WRCRYIDKKYSSI-QNYQNSILS-GYSKYRYCSVDSIRTSSILCVYCP 231
           + C+  ++ YS + +++   +L+ G+S  + C+   +  S ILC  CP
Sbjct: 4   FECKVCNENYSDVDESHVPRVLTCGHSICQSCAAKQMSNSLILCKTCP 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,010,124
Number of Sequences: 27780
Number of extensions: 335578
Number of successful extensions: 930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)