Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00746
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ...    30   1.3  
At4g37440.1 68417.m05299 expressed protein                             30   1.3  
At3g63270.1 68416.m07110 expressed protein                             27   9.0  

>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
           almost identical to ubiquitin-specific protease 22
           GI:11993484 [Arabidopsis thaliana], one amino acid
           difference
          Length = 557

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 336 RVFLINIPTPPCSFCAFFPM*LYPVILTEGLDFLSQVSL--SRHKSMELSLSIVLSNHFF 509
           ++ L  I  P CS+C+ +   LY  ++   +   S + L    +K  ++++ +  S  + 
Sbjct: 45  KIKLQGIDIPRCSYCSVYQKRLYICLICRSISCSSHILLHTQLNKGHDIAIDVERSELYC 104

Query: 510 CLCFE 524
           C C +
Sbjct: 105 CACID 109


>At4g37440.1 68417.m05299 expressed protein
          Length = 471

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 395 HWKKCTKRA--WRCRYIDKKYSSIQN 324
           HW++  +    WRC++I+ KY  +QN
Sbjct: 135 HWRRFVQPTLMWRCKWIELKYKELQN 160


>At3g63270.1 68416.m07110 expressed protein
          Length = 396

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 523 SKHKQKKWLLKTILKDNSIDLCLLNETWLKKSSPSV 416
           +K+K+KK +    L   +ID    +  WL+ SSPSV
Sbjct: 22  AKNKEKKRVNAVPLDPEAIDCDWWDTFWLRNSSPSV 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,558
Number of Sequences: 28952
Number of extensions: 297465
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)