Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00745
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 111 1e-25
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 111 1e-25
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 93 6e-20
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 64 2e-11
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 53 4e-08
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 52 7e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 48 1e-06
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.028
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.028
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.028
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 33 0.049
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 29 1.1
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 29 1.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 1.4
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.3
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 5.6
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.6
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.8
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 25 9.8
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 9.8
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 111 bits (267), Expect = 1e-25
Identities = 58/85 (68%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 ITIKSTAISMFFELEEKD*VFITNPDQREKSE-KDFLINLIDSPGHVDFSSEVTAALRVT 435
+TIKSTAIS+F E+ + D D +E ++ DFL+NLIDSPGHVDFSSEVTAALRVT
Sbjct: 68 VTIKSTAISLFAEMTDDD-----MKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVT 122
Query: 436 DGALVVVECMSGVCVQTETVLRQAM 510
DGALVVV+ + GVCVQTETVLRQA+
Sbjct: 123 DGALVVVDTIEGVCVQTETVLRQAL 147
Score = 100 bits (239), Expect = 3e-22
Identities = 46/65 (70%), Positives = 54/65 (83%)
Frame = +2
Query: 59 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 238
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 239 KDEQD 253
DEQ+
Sbjct: 61 ADEQE 65
Score = 86.6 bits (205), Expect = 4e-18
Identities = 39/82 (47%), Positives = 55/82 (67%)
Frame = +3
Query: 516 RIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKG 695
RI+P++ +NK+DR YQ F R+VE+VNV+I+TY D +G+ +V P KG
Sbjct: 150 RIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK--VLGDCQVFPDKG 207
Query: 696 SVGFGSGLHGWAFTLKQFSEMY 761
+V F SGLHGWAFT++QF+ Y
Sbjct: 208 TVAFASGLHGWAFTVRQFANRY 229
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 767 KFKIDLVKLMNRLWGETF 820
KF ID K+M RLWGE +
Sbjct: 232 KFGIDRNKMMQRLWGENY 249
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 111 bits (267), Expect = 1e-25
Identities = 58/85 (68%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 ITIKSTAISMFFELEEKD*VFITNPDQREKSE-KDFLINLIDSPGHVDFSSEVTAALRVT 435
+TIKSTAIS+F E+ + D D +E ++ DFL+NLIDSPGHVDFSSEVTAALRVT
Sbjct: 68 VTIKSTAISLFAEMTDDD-----MKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVT 122
Query: 436 DGALVVVECMSGVCVQTETVLRQAM 510
DGALVVV+ + GVCVQTETVLRQA+
Sbjct: 123 DGALVVVDTIEGVCVQTETVLRQAL 147
Score = 100 bits (239), Expect = 3e-22
Identities = 46/65 (70%), Positives = 54/65 (83%)
Frame = +2
Query: 59 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 238
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 239 KDEQD 253
DEQ+
Sbjct: 61 ADEQE 65
Score = 86.6 bits (205), Expect = 4e-18
Identities = 39/82 (47%), Positives = 55/82 (67%)
Frame = +3
Query: 516 RIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKG 695
RI+P++ +NK+DR YQ F R+VE+VNV+I+TY D +G+ +V P KG
Sbjct: 150 RIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK--VLGDCQVFPDKG 207
Query: 696 SVGFGSGLHGWAFTLKQFSEMY 761
+V F SGLHGWAFT++QF+ Y
Sbjct: 208 TVAFASGLHGWAFTVRQFANRY 229
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 767 KFKIDLVKLMNRLWGETF 820
KF ID K+M RLWGE +
Sbjct: 232 KFGIDRNKMMQRLWGENY 249
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 92.7 bits (220), Expect = 6e-20
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +1
Query: 259 ITIKSTAISMFFELEEKD*VFITNPDQREKSEKDFLINLIDSPGHVDFSSEVTAALRVTD 438
IT+KS+AIS+FF++ I+ D++ + EKD+LINLIDSPGHVDFSSEV++A R+ D
Sbjct: 68 ITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCD 119
Query: 439 GALVVVECMSGVCVQTETVLRQA 507
GA V+V+ + GVC QT TVLRQA
Sbjct: 120 GAFVLVDAVEGVCSQTITVLRQA 142
Score = 62.9 bits (146), Expect = 5e-11
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +2
Query: 77 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDE 247
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDE 63
Score = 52.8 bits (121), Expect = 6e-08
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = +3
Query: 516 RIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY----------NDDGGPM 665
RIK IL +NKMDR + R+VE VN +I T+ ND+
Sbjct: 146 RIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGTFYTGELMQLADNDEVISD 205
Query: 666 GEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMY 761
+ P +G+V F S GWAF L QFSE Y
Sbjct: 206 EGIYFAPEQGNVVFASAYDGWAFCLDQFSEFY 237
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 64.5 bits (150), Expect = 2e-11
Identities = 38/82 (46%), Positives = 50/82 (60%)
Frame = +1
Query: 259 ITIKSTAISMFFELEEKD*VFITNPDQREKSEKDFLINLIDSPGHVDFSSEVTAALRVTD 438
ITI+S A +E N Q+ EK + IN+ID+PGH+DF+ EV ALRV D
Sbjct: 113 ITIQSAATHCTWERTVDQ--IEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLD 170
Query: 439 GALVVVECMSGVCVQTETVLRQ 504
GA++V+ +SGV QT TV RQ
Sbjct: 171 GAVLVLCAVSGVQSQTITVDRQ 192
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 65 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 196
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 53.2 bits (122), Expect = 4e-08
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +1
Query: 355 KDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLRQAM 510
K F ID+PGHVDF EV A + ++DG ++VV+ + GV + T +++ A+
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAI 258
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +3
Query: 528 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGF 707
+L +NK+DR Y + +++ VN I + D + RV P G+V F
Sbjct: 265 VLVLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQISKDL----KYRVSPELGNVCF 320
Query: 708 GSGLHGWAFTLKQFSEMYV 764
S G+ FTL F+++Y+
Sbjct: 321 ASCDLGYCFTLSSFAKLYI 339
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 52.4 bits (120), Expect = 7e-08
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +1
Query: 367 INLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLRQA 507
INLID+PGH DF+ EV ++ V DGA+ +++ +GV QT+ V +QA
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQA 141
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2
Query: 110 NIRNMSVIAHVDHGKSTLTDSLVSKAG 190
+IRN+ +IAH+D GK+TLT+ ++ G
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +1
Query: 355 KDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
+ +L+NLID+PGHVDF +EV +L +G +++V+ G+ QT
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQT 165
Score = 43.2 bits (97), Expect = 5e-05
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +2
Query: 83 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 196
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI 85
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 33.1 bits (72), Expect = 0.049
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 376 IDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
+D PGH D+ + DGA++VV G QT
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMPQT 157
Score = 30.3 bits (65), Expect = 0.35
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 101 KKRNIRNMSVIAHVDHGKSTLTDSL 175
KK ++ N+ I HVDHGK+TLT ++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAI 73
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 28.7 bits (61), Expect = 1.1
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 11/114 (9%)
Frame = +2
Query: 53 SKMVN-FTVDEIRGMMDKKRNIRNMSVIAH--VDHGKSTLTDSLVSKAG----IIAGARA 211
SKM N + I+ K RN +A V K+ D+ +S + + G A
Sbjct: 92 SKMRNTVNLQHIQAANQKTRNAEGERKVAQRRVQSDKAEANDAAMSSSAPTVDVSEGNSA 151
Query: 212 GETRFT----DTRKDEQDLASPLNLRPSLCSSSLKRKIKYSSQTLTSVKRVRKI 361
E + T DT + D+ +N+ + S K + + T S KRV K+
Sbjct: 152 AEPKITPDDSDTPRLNVDMNDKINVDEAAAKSDSKLNVDQINSTTESEKRVEKV 205
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/82 (19%), Positives = 39/82 (47%)
Frame = +2
Query: 113 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDLASPLNLRPSLCS 292
+++ I+H++ KS+ + V+ I + + G F+D + ++ PS S
Sbjct: 112 VKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATSANNPFSLSTDVNPSKPS 171
Query: 293 SSLKRKIKYSSQTLTSVKRVRK 358
S++ K ++++ S+ +K
Sbjct: 172 SNVFSKPSFAAKAQQSITDQQK 193
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 373 LIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLR 501
+ID+PGH F++ + + + A++V++ M G+ QT +R
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVIDIMHGLEPQTIESIR 595
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 122 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 223
++++ HVDHGK+TL D+ K+ I + G T+
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQ 206
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 367 INLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLR 501
I +D+PGH+ F + + D ++VV GV QT ++
Sbjct: 222 ITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGVKPQTVEAIK 266
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.3
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 497 STVSVCTHTPDIHSTTTR-APSVTRSAAVTSEEKSTCPGESIKLIKKSFSLFSRWSGFVM 321
+T S + +P STTT +PS + S++ +S S+ S S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 320 NT*SFSSSSKNIEMAV 273
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 236 RKDEQDLASPLNLRPSLCSSSLKRKIK-YSSQTLTSVKR 349
+KD +SPLN + + S +K+K+ ++S T TS+++
Sbjct: 424 QKDSMRRSSPLNEKVTASSERMKKKLALFASSTDTSMQK 462
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 119 NMSVIAHVDHGKSTLTDSLVSKAGII 196
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 115 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 20
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 9.8
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +1
Query: 367 INLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLRQAMPXASSLFCS*TK 546
I + S S + +AA ++ D AL V++ +SG Q ++ A LFC T
Sbjct: 248 ITRLQSEISAQLSIQSSAAEKLYDDALNVMDSLSGGNQQLIKAKSRSSRTARLLFCIFTV 307
Query: 547 WTVLFLS 567
+L LS
Sbjct: 308 MGLLLLS 314
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 110 SASCPSSHGSRLP*NSPF*MVYDFCSIK 27
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 144 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 251
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,322
Number of Sequences: 5004
Number of extensions: 72699
Number of successful extensions: 254
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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