Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00745
(821 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 133 2e-31
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 46 3e-05
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 40 0.002
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.013
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 33 0.28
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.37
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 31 0.85
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.85
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69) 30 2.6
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 6.0
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48) 28 8.0
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 133 bits (321), Expect = 2e-31
Identities = 65/85 (76%), Positives = 75/85 (88%)
Frame = +1
Query: 256 CITIKSTAISMFFELEEKD*VFITNPDQREKSEKDFLINLIDSPGHVDFSSEVTAALRVT 435
CITIKSTAIS+++EL E D +IT P ++ E+ FLINLIDSPGHVDFSSEVTAALRVT
Sbjct: 66 CITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVT 123
Query: 436 DGALVVVECMSGVCVQTETVLRQAM 510
DGALVVV+C+SGVCVQTETVLRQA+
Sbjct: 124 DGALVVVDCVSGVCVQTETVLRQAI 148
Score = 122 bits (295), Expect = 3e-28
Identities = 58/64 (90%), Positives = 61/64 (95%)
Frame = +2
Query: 62 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 241
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 242 DEQD 253
DEQD
Sbjct: 61 DEQD 64
Score = 122 bits (294), Expect = 4e-28
Identities = 55/84 (65%), Positives = 64/84 (76%)
Frame = +3
Query: 510 AXRIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPS 689
A RIKP+LFMNKMDR YQTF RIVE++NVIIATY+D+ GPMG ++V P
Sbjct: 149 AERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIATYSDEDGPMGNIQVGPE 208
Query: 690 KGSVGFGSGLHGWAFTLKQFSEMY 761
KG+V FGSGLHGWAFTLKQ SE+Y
Sbjct: 209 KGTVAFGSGLHGWAFTLKQISEIY 232
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 767 KFKIDLVKLMNRLWGETF 820
KFKI KLM RLWG+ F
Sbjct: 235 KFKIPPAKLMKRLWGDQF 252
>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 684 PSKGSVGFGSGLHGWAFTLKQFSEMY 761
P KG+V FGSGLHGWAFTLKQ SE+Y
Sbjct: 34 PEKGTVAFGSGLHGWAFTLKQISEIY 59
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 767 KFKIDLVKLMNRLWGETF 820
KFKI KLM RLWG+ F
Sbjct: 62 KFKIPPAKLMKRLWGDQF 79
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +1
Query: 265 IKSTAISMFFELEEKD*VFITNPDQREKSEKDFLINLIDSPGHVDFSSEVTAALRVTDGA 444
IK A S F E+E + + + + +D IN++D+PGH DF+ + L D
Sbjct: 48 IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106
Query: 445 LVVVECMSGVCVQTETVL 498
+VV++ GV QTE ++
Sbjct: 107 IVVIDVAKGVEEQTEKLV 124
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 98 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 211
D+ + R +I+H D GK+TLT+ L+ G I A A
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 113 IRNMSVIAHVDHGKSTLTDSLVSKAGIIA 199
+RN S++AHVDHGKSTL D L+ G I+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTIS 1969
Score = 35.1 bits (77), Expect = 0.069
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 376 IDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
+ + GHVDFS EV+ +L G +++V+ GV QT
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQT 2027
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 403 SSEVTAALRVTDGALVVVECMSGVCVQTETVLRQA 507
+ +V+ A+R+ DGALVVV+ + GV QT VLRQA
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQA 55
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +1
Query: 409 EVTAALRVTDGALVVVECMSGVCVQTETVLRQA 507
+V+ A+R+ DGALVVV+ + GV QT VLRQA
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQA 125
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 519 IKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 641
I+P L +NK+DR + Q+I+E VN I T
Sbjct: 130 IRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/76 (23%), Positives = 39/76 (51%)
Frame = +3
Query: 537 MNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSG 716
+NK+DR Y + +++ VN +++ +++ ++ + P G+V F S
Sbjct: 188 INKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSEGAD---DLVISPLLGNVCFASS 244
Query: 717 LHGWAFTLKQFSEMYV 764
+ + FTL F+++YV
Sbjct: 245 SYHFCFTLLSFAKLYV 260
Score = 34.7 bits (76), Expect = 0.092
Identities = 20/85 (23%), Positives = 41/85 (48%)
Frame = +2
Query: 59 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 238
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 239 KDEQDLASPLNLRPSLCSSSLKRKI 313
+ + A NL ++C + + R I
Sbjct: 172 RLLKH-AVQENLAITICINKIDRLI 195
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +1
Query: 367 INLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLRQAM 510
I ID+PGH F+S VTD ++VV GV QT +R AM
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAM 125
Score = 32.7 bits (71), Expect = 0.37
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 122 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 223
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 33.1 bits (72), Expect = 0.28
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 355 KDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSG 471
K+ +I L+D+PGH DF + D A++VV+ ++G
Sbjct: 11 KNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITG 49
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 373 LIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
+ID+PGH FS+ + + D A++VV+ M G+ QT
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQT 719
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.85
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 122 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 223
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 358 DFLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLRQA 507
D I +D+PGH F++ +VTD ++VV V QT+ + A
Sbjct: 137 DQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHA 186
>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
Length = 348
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/89 (22%), Positives = 41/89 (46%)
Frame = +2
Query: 86 RGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDLASP 265
R ++DK+ I +M V +HG D++ ++ A + Q A+
Sbjct: 204 RRLLDKQERIDSMIVNLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQSGANN 263
Query: 266 LNLRPSLCSSSLKRKIKYSSQTLTSVKRV 352
N+ ++ L++KIK +S+ T +K++
Sbjct: 264 TNIELIGKTNLLQKKIKIASEVGTILKQL 292
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = +2
Query: 38 KNHK-PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 214
K H+ P + T R M+ + N +++ GK+ T ++ +AG G
Sbjct: 139 KRHEVPPHIYAITDTAYRSMLQDREN-QSILCTGESGAGKTENTKKVIQYLAAVAGHSYG 197
Query: 215 ETRFTDTRKDEQDLASPLNLRPSLCSSSLKRKIKYSS 325
+ T + ++ + P ++ + C L R +K S
Sbjct: 198 KVHATPQKTEKGGKSKPTSMTQTKCVGDLLRHVKTDS 234
>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 233 TRKDEQDLASPLNLRPSLCSSSLKRKIKYSSQTLTSVKRVRK 358
TRK + P ++R S S +++ I+ S TL + K +RK
Sbjct: 11 TRKSKTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -1
Query: 479 THTPDIHSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKSFSLFSRWSG 330
TH+P TTT AP+ E C G+ ++L KS +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCG 664
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 440 PSVTRSAAVTSEEKSTCPGESIKLIKKSFSLFSRWSGFVMN 318
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 718 RPDPKPTEPLLGSTRTSPMGPPSS 647
+P PK T P+ G+ + PMGPP S
Sbjct: 641 KPRPKSTPPM-GAVQVLPMGPPPS 663
>SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 497 STVSVCTHTPDIHSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKS 357
S +S H P H T AP + SA + +E + ES K+S
Sbjct: 33 SRISSRHHPPSSHRTVHDAPRASESATIANESTTKTHAESSGWTKRS 79
>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
Length = 947
Score = 28.3 bits (60), Expect = 8.0
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = +2
Query: 98 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDLASPLNLR 277
DK ++++ + V + L + VS+ G AG R G D+RK+E L S
Sbjct: 387 DKDKDLQAGEARSGVSTRRRVLNEDEVSEKG--AGGREGGVENNDSRKEENSLVS----- 439
Query: 278 PSLCSSSLKRKIKYSSQTLTSVKR 349
+ +L K+K SS L+++K+
Sbjct: 440 -TSIKQTLTNKVKESS--LSALKK 460
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,731,996
Number of Sequences: 59808
Number of extensions: 581384
Number of successful extensions: 1944
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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