Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00745
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 131 5e-31
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 131 5e-31
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 67 1e-11
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 67 1e-11
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 63 3e-10
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 63 3e-10
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 4e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 55 5e-08
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 35 0.061
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 34 0.14
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 34 0.14
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 34 0.14
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.19
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.25
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.25
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.25
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.25
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.33
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.33
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.75
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 31 1.00
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 31 1.00
U42844-8|AAB53820.1| 400|Caenorhabditis elegans Hypothetical pr... 30 2.3
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 29 3.0
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 3.0
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.0
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 29 4.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 4.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 4.0
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 5.3
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 28 7.0
Z68882-3|CAA93106.2| 568|Caenorhabditis elegans Hypothetical pr... 28 9.3
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 131 bits (317), Expect = 5e-31
Identities = 60/84 (71%), Positives = 66/84 (78%)
Frame = +3
Query: 510 AXRIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPS 689
A RIKP+LFMNKMDR +QTFQRIVEN+NVIIATY DD GPMG + VDPS
Sbjct: 160 AERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIATYGDDDGPMGPIMVDPS 219
Query: 690 KGSVGFGSGLHGWAFTLKQFSEMY 761
G+VGFGSGLHGWAFTLKQF+EMY
Sbjct: 220 IGNVGFGSGLHGWAFTLKQFAEMY 243
Score = 130 bits (315), Expect = 9e-31
Identities = 69/93 (74%), Positives = 76/93 (81%), Gaps = 8/93 (8%)
Frame = +1
Query: 256 CITIKSTAISMFFELEEKD*VFITNPDQREKSEKD--------FLINLIDSPGHVDFSSE 411
CITIKSTAIS+FFELE+KD F+ +Q E E D FLINLIDSPGHVDFSSE
Sbjct: 67 CITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSE 126
Query: 412 VTAALRVTDGALVVVECMSGVCVQTETVLRQAM 510
VTAALRVTDGALVVV+C+SGVCVQTETVLRQA+
Sbjct: 127 VTAALRVTDGALVVVDCVSGVCVQTETVLRQAI 159
Score = 126 bits (305), Expect = 1e-29
Identities = 59/65 (90%), Positives = 64/65 (98%)
Frame = +2
Query: 59 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 238
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 239 KDEQD 253
KDEQ+
Sbjct: 61 KDEQE 65
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 131 bits (317), Expect = 5e-31
Identities = 60/84 (71%), Positives = 66/84 (78%)
Frame = +3
Query: 510 AXRIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPS 689
A RIKP+LFMNKMDR +QTFQRIVEN+NVIIATY DD GPMG + VDPS
Sbjct: 160 AERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIATYGDDDGPMGPIMVDPS 219
Query: 690 KGSVGFGSGLHGWAFTLKQFSEMY 761
G+VGFGSGLHGWAFTLKQF+EMY
Sbjct: 220 IGNVGFGSGLHGWAFTLKQFAEMY 243
Score = 128 bits (308), Expect = 6e-30
Identities = 68/93 (73%), Positives = 75/93 (80%), Gaps = 8/93 (8%)
Frame = +1
Query: 256 CITIKSTAISMFFELEEKD*VFITNPDQREKSEKD--------FLINLIDSPGHVDFSSE 411
CITIKSTAIS+FFELE+KD F+ +Q E E D FLINLIDSPGHVDFSSE
Sbjct: 67 CITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSE 126
Query: 412 VTAALRVTDGALVVVECMSGVCVQTETVLRQAM 510
VTAAL VTDGALVVV+C+SGVCVQTETVLRQA+
Sbjct: 127 VTAALGVTDGALVVVDCVSGVCVQTETVLRQAI 159
Score = 126 bits (305), Expect = 1e-29
Identities = 59/65 (90%), Positives = 64/65 (98%)
Frame = +2
Query: 59 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 238
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 239 KDEQD 253
KDEQ+
Sbjct: 61 KDEQE 65
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/49 (59%), Positives = 41/49 (83%)
Frame = +1
Query: 364 LINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLRQAM 510
LINLIDSPGHVDFS EVT+AL ++D AL++++ + G+C QTE ++RQ +
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVI 132
Score = 58.0 bits (134), Expect = 8e-09
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2
Query: 110 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 250
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQ 65
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Frame = +3
Query: 528 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY-------NDDGGPMGE----V 674
IL +NK+DR YQ R++E VN I+ +D G + E +
Sbjct: 139 ILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCISQVLGGIVLEDDTWGNIEESEAKL 198
Query: 675 RVDPSKGSVGFGSGLHGWAFTLKQFSEM 758
DP+KG+V F S LH +AF + F+++
Sbjct: 199 HFDPAKGNVIFSSALHSYAFGCEDFAQI 226
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/49 (59%), Positives = 41/49 (83%)
Frame = +1
Query: 364 LINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLRQAM 510
LINLIDSPGHVDFS EVT+AL ++D AL++++ + G+C QTE ++RQ +
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVI 132
Score = 58.0 bits (134), Expect = 8e-09
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2
Query: 110 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 250
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQ 65
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Frame = +3
Query: 528 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY-------NDDGGPMGE----V 674
IL +NK+DR YQ R++E VN I+ +D G + E +
Sbjct: 139 ILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCISQVLGGIVLEDDTWGNIEESEAKL 198
Query: 675 RVDPSKGSVGFGSGLHGWAFTLKQFSEM 758
DP+KG+V F S LH +AF + F+++
Sbjct: 199 HFDPAKGNVIFSSALHSYAFGCEDFAQI 226
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 62.9 bits (146), Expect = 3e-10
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = +1
Query: 316 VFITNPDQREKSEKDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETV 495
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +V+V+ GV + TE
Sbjct: 189 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 245
Query: 496 LRQAM 510
+R A+
Sbjct: 246 IRHAI 250
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 92 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDLASPL 268
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ +
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 269 NLRP 280
+P
Sbjct: 185 KSQP 188
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 62.9 bits (146), Expect = 3e-10
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = +1
Query: 316 VFITNPDQREKSEKDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETV 495
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +V+V+ GV + TE
Sbjct: 64 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 120
Query: 496 LRQAM 510
+R A+
Sbjct: 121 IRHAI 125
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDLASPLN 271
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ +
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 272 LRP 280
+P
Sbjct: 61 SQP 63
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = +1
Query: 355 KDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLRQA 507
K INLID+PGHVDF EV +RV DG +VV++ +GV QT TV RQ+
Sbjct: 88 KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQTLTVWRQS 138
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +2
Query: 113 IRNMSVIAHVDHGKSTLTDSLVSKAGII 196
+RN+ VIAHVD GK+T+T+ L+ AG I
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = +1
Query: 367 INLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTETVLRQ 504
IN+ID+PGHVDF+ EV ALRV DGA++V+ + GV QT TV RQ
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQ 159
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 113 IRNMSVIAHVDHGKSTLTDSLVSKAGII 196
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +1
Query: 355 KDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
+ +L+NLID+PGHVDFS+EV+ +L V DG L++V GV QT
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQT 143
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2
Query: 113 IRNMSVIAHVDHGKSTLTDSLVSKAGII 196
IRN ++AHVDHGKSTL D L+ G +
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAV 69
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 35.1 bits (77), Expect = 0.061
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +2
Query: 44 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 220
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 221 RFTDTRKDEQDLASPLNLRPSLCSSSLKRKIKYSSQTLTSV 343
R +QD + ++L L + R+ T+TS+
Sbjct: 670 TIEKQRVQQQDGGNLMDLSALLTNQVRNRESAARRPTITSI 710
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 119 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDLASPLN 271
N+ I HVDHGK+TLT ++ GA+ + D +E+ +N
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 101
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 376 IDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
ID PGH D+ + +GA++VV G QT
Sbjct: 117 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQT 153
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 119 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDLASPLN 271
N+ I HVDHGK+TLT ++ GA+ + D +E+ +N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 376 IDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
ID PGH D+ + +GA++VV G QT
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQT 154
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 119 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDLASPLN 271
N+ I HVDHGK+TLT ++ GA+ + D +E+ +N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 376 IDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
ID PGH D+ + +GA++VV G QT
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQT 154
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 373 LIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
LID PGH V AA V D A+V+++ ++G+ QT
Sbjct: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 119 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQDL 256
N+ ++ HVD GK+TLT + A A A T R++ DL
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDL 61
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 361 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSG 471
+ I +ID+PGH DF + D A++VV C +G
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 361 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSG 471
+ I +ID+PGH DF + D A++VV C +G
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 361 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSG 471
+ I +ID+PGH DF + D A++VV C +G
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 373 LIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
+ID+PGH FS+ T + D A++VV+ M G+ QT
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQT 590
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 95 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 361 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVEC 462
+ I +ID+PGH DF + D A++VV C
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVAC 118
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 32.7 bits (71), Expect = 0.33
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 125 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDLASPLNLRPSLCSSSLK 304
+++ D GK+TL ++L S AG G A +F TR+ S +N R SS
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRRRFNKFCSHINYRNQYPSSLSV 110
Query: 305 RKIKY 319
R + Y
Sbjct: 111 RSLLY 115
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 367 INLIDSPGHVDFSSEVTAALRVTDGALVVVECMSG 471
I L+D+PGH DF S + D A++VV +G
Sbjct: 250 IVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 284
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 367 INLIDSPGHVDFSSEVTAALRVTDGALVVVECMSG 471
I L+D+PGH DF S + D A++VV +G
Sbjct: 268 IVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 302
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 98 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 223
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 31.1 bits (67), Expect = 1.00
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 119 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDLASPLNLRPSLCSSS 298
N+ I H+DHGK+TLT ++ A+ + D K+E+ +N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 299 LKR 307
L+R
Sbjct: 107 LRR 109
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 379 DSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTE 489
D PGH DF + D A++V+ GV QT+
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQTK 150
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 31.1 bits (67), Expect = 1.00
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 119 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDLASPLNLRPSLCSSS 298
N+ I H+DHGK+TLT ++ A+ + D K+E+ +N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 299 LKR 307
L+R
Sbjct: 107 LRR 109
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 379 DSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQTE 489
D PGH DF + D A++V+ GV QT+
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQTK 150
>U42844-8|AAB53820.1| 400|Caenorhabditis elegans Hypothetical
protein C08A9.8 protein.
Length = 400
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 461 HSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKSFS 351
H T TRAP + +SA++T+E G+ + K +
Sbjct: 47 HKTATRAPKIKKSASITTERSPRNLGQKSTIFGKELA 83
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 497 STVSVCTHTPDIHSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 360
+T + T + +TTT APS T + VT K P E KL+KK
Sbjct: 764 TTAAPSTKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -1
Query: 497 STVSVCTHTPDIHSTTTRAPSVTRSAAVTS 408
STVSV T T + ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -1
Query: 497 STVSVCTHTPDIHSTTTRAPSVTRSAAVTS 408
STVSV T T + ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 119 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQDL 256
N+ ++ HVD GK+TLT + A A A T R++ DL
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDL 61
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -1
Query: 584 FSFKLELKKSTVHFVHEQNRLDAXGIA*RSTVSVCTHTPDIHSTTTRAPSVTRSAAVTSE 405
+S KKS+ H N R +C H PD+H+ +R ++T E
Sbjct: 80 YSDATNCKKSSNHIKRPMNAFMVWSQMERR--KICEHQPDMHNAEISKQLGSRWRSLTDE 137
Query: 404 EKSTCPGESIKL 369
EK+ E+ +L
Sbjct: 138 EKAPFVAEAERL 149
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 146 DRRGRSQTCCGYSASCPSSHG 84
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 146 DRRGRSQTCCGYSASCPSSHG 84
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 61 GEFHGRRDPWDDGQEAEYPQHVCDR 135
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 61 GEFHGRRDPWDDGQEAEYPQHVCDR 135
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical
protein K09E2.1 protein.
Length = 915
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 497 STVSVCTHTPDIHS--TTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKS 357
ST S T P S TTT+ PS T S V S +K+T P S + KKS
Sbjct: 562 STTSSTTTKPTTLSTTTTTQVPSTTTSVTVPSTQKAT-PSPS-RTTKKS 608
>Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical
protein T07A5.1 protein.
Length = 379
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 280 ISMFFELEEKD*VFITNPDQREKSEKDFLINL 375
I +FFE EEK V + + D +EK+ K+ L NL
Sbjct: 23 IKIFFE-EEKFDVLVVSLDSKEKTSKECLSNL 53
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 467 DIHSTTTRAPSVTRSAAVTSEEKSTCPGESIK 372
D +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>Z68882-3|CAA93106.2| 568|Caenorhabditis elegans Hypothetical
protein C47E12.3 protein.
Length = 568
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 728 PPMKTRPETNRALARVDTHFTHGT 657
PP+K P TN + T FT GT
Sbjct: 520 PPLKPLPRTNSSFCETATDFTFGT 543
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,436,527
Number of Sequences: 27780
Number of extensions: 424245
Number of successful extensions: 1423
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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