Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00745
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    33   0.004
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    33   0.004
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.039
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    29   0.069
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    29   0.069
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.64 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 95  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 361 FLINLIDSPGHVDFSSEVTAALRVTDGALVVV 456
           + + +ID+PGH DF   +       D A+++V
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 116


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 95  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 190
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32



 Score = 28.7 bits (61), Expect = 0.069
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 361 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSG 471
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.039
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 122 MSVIAHVDHGKSTLTDSL 175
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165



 Score = 28.7 bits (61), Expect = 0.069
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 367 INLIDSPGHVDFSSEVTAALRVTDGALVVVECMSGVCVQT 486
           +  +D+PGH  F S       +TD  ++VV    GV  QT
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQT 234


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 28.7 bits (61), Expect = 0.069
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 361 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSG 471
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 48


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 0.069
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 361 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVECMSG 471
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 64


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 NMSVIAHVDHGKSTLTDSL 175
           N+  I HV HGKST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 194 IAGARAGETRFTDT-RKDEQDLASPLNLRPSLCSSSLKRKIKYSS 325
           + G  AG+   T +  KD Q   SP  L P+L S+++ +   YSS
Sbjct: 631 VCGVAAGDPPLTISWLKDGQ---SPFPLPPNLASANISQLDPYSS 672


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 572  LELKKSTVHFVHEQNRLDAXGIA*RSTVSVCTHTPDIHSTTTRAP 438
            +E +K+    +  Q R+ + G+   +TVS+   T    + T R+P
Sbjct: 872  IEKRKTLRASIAAQRRIQSNGLNDPTTVSLAVDTVARSNVTPRSP 916


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 165 RTRWFPRPVSLLVREPERPVSLTRVRTNKTLHHH*IYGHLY 287
           R  W  R      RE  R   +    +NKT+H++  Y + Y
Sbjct: 60  RETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNY 100


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 165 RTRWFPRPVSLLVREPERPVSLTRVRTNKTLHHH*IYGHLY 287
           R  W  R      RE  R   +    +NKT+H++  Y + Y
Sbjct: 60  RETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNY 100


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 165 RTRWFPRPVSLLVREPERPVSLTRVRTNKTLHHH*IYGHLY 287
           R  W  R      RE  R   +    +NKT+H++  Y + Y
Sbjct: 60  RETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNY 100


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 100 VHHPTDLVYREIHH 59
           +HHP   + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,951
Number of Sequences: 438
Number of extensions: 5426
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)