Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00744
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZTU1 Cluster: CDNA FLJ44225 fis, clone THYMU3006168; ...    36   1.2  
UniRef50_UPI00006CD8A0 Cluster: hypothetical protein TTHERM_0052...    34   3.7  
UniRef50_UPI0000DBFE1A Cluster: UPI0000DBFE1A related cluster; n...    33   4.9  
UniRef50_UPI0000DC08C2 Cluster: UPI0000DC08C2 related cluster; n...    33   8.6  
UniRef50_A6NLZ5 Cluster: Uncharacterized protein ENSP00000371562...    33   8.6  

>UniRef50_Q6ZTU1 Cluster: CDNA FLJ44225 fis, clone THYMU3006168;
           n=2; Homo sapiens|Rep: CDNA FLJ44225 fis, clone
           THYMU3006168 - Homo sapiens (Human)
          Length = 262

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = -3

Query: 542 YQTIFVRLVKFYSKLYLY*IAICTHERRQSHVSADWALVTR*LYKAMDI*YIYARTKTIL 363
           Y  IF+     ++ +Y Y   IC H     H+ A +A +   +Y  M   Y+Y+ T+  +
Sbjct: 108 YICIFI-YTHMHTYVYSY-ARICIH--MYIHIHA-YACICMFMYAHMRA-YVYSYTRICI 161

Query: 362 YICMYVYVYMC 330
           +IC+++Y Y+C
Sbjct: 162 HICIFIYTYVC 172


>UniRef50_UPI00006CD8A0 Cluster: hypothetical protein
           TTHERM_00522090; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00522090 - Tetrahymena
           thermophila SB210
          Length = 628

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -1

Query: 559 FDSAFSTKQYLFVS*NFIQNYIYIKLQSVHTSGDSRT*AQTGLLLPGD 416
           F +++ST+Q+L  S N+I+ + YI       SG + T + +G L  GD
Sbjct: 19  FQASYSTQQFLKQSINYIKQFTYIIKMGNQNSGSNSTISFSGSLRSGD 66


>UniRef50_UPI0000DBFE1A Cluster: UPI0000DBFE1A related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DBFE1A UniRef100 entry -
           Rattus norvegicus
          Length = 164

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 359 ICMYVYVYMCTLDRHNTFKTRRWKHKSIYITYIINNESRRTALFTITHTRSRP-IYIYV 186
           +C++V+V++C    H    T    H  IYI   I   +  T   T THT +    YIY+
Sbjct: 88  VCVHVHVHVCV---HTHTHTHTHTHTHIYIYIYIYTHTIHTHTHTHTHTHTHTYTYIYI 143


>UniRef50_UPI0000DC08C2 Cluster: UPI0000DC08C2 related cluster; n=2;
           Rattus norvegicus|Rep: UPI0000DC08C2 UniRef100 entry -
           Rattus norvegicus
          Length = 271

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
 Frame = -3

Query: 509 YSKLYLY*IAICTHERRQSHVSADWALVTR*LYKAMDI*-YIYARTKTILYICMYVYVYM 333
           Y+  ++Y I I  H    +H+   +      +Y    I  YI+    T ++IC++ Y++ 
Sbjct: 53  YTYTHIY-IHIHIHIHTYTHIYTYYTYTYTNIYTHTQIYIYIHIHIHTYMHICIHTYIHT 111

Query: 332 CTLDRHNTFKTRRWKHKSIYITYIINNESRRTALFTITHTRSRPIYIYV 186
                 +T    R KH  IYI Y+  ++      +T  HT    IYIY+
Sbjct: 112 ------HTHTHTRSKHTCIYI-YVDMHKDIDRGTYTCKHT---CIYIYM 150


>UniRef50_A6NLZ5 Cluster: Uncharacterized protein ENSP00000371562;
           n=3; Eukaryota|Rep: Uncharacterized protein
           ENSP00000371562 - Homo sapiens (Human)
          Length = 162

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 485 IAICTHERRQSHVSADWALVTR*LYKAMDI*YIYARTKTILYICMYVYV--YMCTLDR 318
           I IC + R   H+   +A V   +   + I YIY   +T ++IC+Y YV  YMC   R
Sbjct: 10  IHICVYIRTYIHICV-YAYVYTYMCVCVRI-YIYVCMRTYIHICVYAYVYKYMCVCVR 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,247,169
Number of Sequences: 1657284
Number of extensions: 12437641
Number of successful extensions: 27827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27680
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)