Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00744
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    30   0.020
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    25   0.76 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 0.020
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -3

Query: 365 LYICMYVYVYMCTLDRHNTFKTRRWKHKSIYITYIINNESRRTALFTITHTRSRPIYIYV 186
           LY C +  + +  L R+   K + W+++  Y T       ++T LF    T   PI++ V
Sbjct: 145 LYNCFHSTLLLMILSRYQRLKAQLWQNR--YETVAHGMTVQKTTLFFFNRTFGVPIFL-V 201

Query: 185 *VFV 174
            VFV
Sbjct: 202 LVFV 205


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 250 NLVEPHCLQSHTQGPVRYIYMCRCSSSREGRLNSQ 146
           NLV  +C  ++    +R ++ CRC   +   L  Q
Sbjct: 156 NLVYVYCCDNNFNVFLRQVFTCRCKDYKNEDLEDQ 190


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 193 YMCRCSSSREGRLNSQT 143
           +MCRC    EG   SQ+
Sbjct: 166 FMCRCPPDWEGTTLSQS 182


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 268  VIYIDLCFQRRVLNV 312
            + Y+D  FQRRV  +
Sbjct: 1387 IFYLDEAFQRRVTQI 1401


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 268  VIYIDLCFQRRVLNV 312
            + Y+D  FQRRV  +
Sbjct: 1387 IFYLDEAFQRRVTQI 1401


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,701
Number of Sequences: 336
Number of extensions: 3541
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)