Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00744
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                29   2.7  
SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               29   3.5  

>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 631 YVYKHFCKRLGIVPGRMRNNNKSNFDSAFSTKQYLFVS-*NFIQNYIYIKLQSVHTSGDS 455
           Y  K   KRLG   GR   N +   +  FS  +YL +S   F+QN    K +S+  +GD 
Sbjct: 65  YDRKALSKRLGRHFGRRYYNEELEGEIDFSMAKYLTISKQRFLQNKNSYKAKSISNNGDP 124

Query: 454 RT 449
            T
Sbjct: 125 TT 126


>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 392 YIYARTKTILYICMYVYVYMCTL 324
           Y Y  T+   Y+C  VY Y+CTL
Sbjct: 251 YAYLCTRIYAYVCACVYDYVCTL 273


>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 392 YIYARTKTILYICMYVYVYMCTLDRHNTFKTRRW 291
           Y+Y      +Y+ +YVYVY+      +  + R+W
Sbjct: 272 YVYVYVYVYVYVYVYVYVYVYVYGSASIDRVRKW 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,602,702
Number of Sequences: 59808
Number of extensions: 409459
Number of successful extensions: 1191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)