Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00744
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.51 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.51 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.7  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   6.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   6.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -2

Query: 204  SDIYICVGVRLPGRDASTVKHFIVIEASPPEYRETSSYIQREL 76
            S  Y C    L GRD   V+  +     PP   ET+    R +
Sbjct: 882  SGAYFCQASNLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSI 924


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -2

Query: 204  SDIYICVGVRLPGRDASTVKHFIVIEASPPEYRETSSYIQREL 76
            S  Y C    L GRD   V+  +     PP   ET+    R +
Sbjct: 878  SGAYFCQASNLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSI 920


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -1

Query: 604 LGIVPGRMRNNNKSNFDSAFSTKQYLFVS*NFIQNY 497
           LG+  G +RNN++  +  + +++   +V+ + I+NY
Sbjct: 249 LGLALGPIRNNDRILYFHSLASRVESWVNTSVIRNY 284


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 627 TYYVIPKLTLRQNCK 671
           +Y+V P ++++ NCK
Sbjct: 19  SYFVTPTMSIKCNCK 33


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 210 PCVCDCKQCGST 245
           PC C C++C  T
Sbjct: 1   PCYCTCEKCKIT 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,549
Number of Sequences: 438
Number of extensions: 4298
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)