Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00744
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19670.1 68418.m02340 exostosin family protein contains Pfam ...    29   2.2  
At5g14500.1 68418.m01698 aldose 1-epimerase family protein simil...    27   8.8  

>At5g19670.1 68418.m02340 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 600

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
 Frame = -1

Query: 316 TTHSRRVAGNTNLYISPI*LTTNLVEPHCLQSHTQGPVRYIYMCRCSSSREGRLNSQ--- 146
           T + R     TNL       T ++   +   + T G   ++  C   +  E R + +   
Sbjct: 332 TLYVRNSHNRTNLRQFLKEYTEHISSKYPFFNRTDGADHFLVACHDWAPYETRHHMEHCI 391

Query: 145 TLYCHRGVAAG--VPRDIKLHTTRIN*K*NSVRSAGGEPP 32
              C+  V AG  + RDI L  T +    N +R  GG+PP
Sbjct: 392 KALCNADVTAGFKIGRDISLPETYVRAAKNPLRDLGGKPP 431


>At5g14500.1 68418.m01698 aldose 1-epimerase family protein similar
           to apospory-associated protein C, Chlamydomonas
           reinhardtii, EMBL:AF195243 Pfam profile PF01263: Aldose
           1-epimerase
          Length = 306

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 607 RLGIVPGRMRNNNKSNFDSAFSTKQYLFVS 518
           +L I+P R+RN +   F   FS + YL+VS
Sbjct: 136 KLTIIP-RVRNTDTKAFSFMFSLRNYLYVS 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,673
Number of Sequences: 28952
Number of extensions: 264004
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)