Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00743
(704 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 145 3e-37
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 145 3e-37
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 4.9
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 145 bits (352), Expect = 3e-37
Identities = 69/93 (74%), Positives = 71/93 (76%)
Frame = +1
Query: 229 QGYRRCLRPIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 408
+G C IPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54 KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113
Query: 409 YFXXXXXXXXXXXXTSLCFVYPLDFARTRLAAD 507
YF TSLCFVYPLDFARTRLAAD
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAAD 146
Score = 122 bits (293), Expect = 4e-30
Identities = 52/64 (81%), Positives = 59/64 (92%)
Frame = +3
Query: 510 GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDKARGMLPDP 689
GK G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYD ARGMLPDP
Sbjct: 148 GKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDP 207
Query: 690 KNTP 701
K TP
Sbjct: 208 KKTP 211
Score = 107 bits (257), Expect = 1e-25
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = +2
Query: 71 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKQLLQVQHVSKQIAADQRYKGIVDAF 250
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVK LLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 251 VLSPRSR 271
V P+ +
Sbjct: 61 VRIPKEQ 67
Score = 25.8 bits (54), Expect = 0.40
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 525 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDK 665
++ + G+ +C +I K G + +RG +V +A F F DK
Sbjct: 50 EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDK 96
Score = 22.2 bits (45), Expect = 4.9
Identities = 24/100 (24%), Positives = 35/100 (35%)
Frame = +1
Query: 232 GYRRCLRPIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY 411
G CL I K G+ +RG +V +A F F D + + KKT F
Sbjct: 158 GLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLIS 215
Query: 412 FXXXXXXXXXXXXTSLCFVYPLDFARTRLAADAVREMASV 531
+ S YP D R R+ + R + +
Sbjct: 216 WGIAQVVTTVAGIVS----YPFDTVRRRMMMQSGRAKSEI 251
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 145 bits (352), Expect = 3e-37
Identities = 69/93 (74%), Positives = 71/93 (76%)
Frame = +1
Query: 229 QGYRRCLRPIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 408
+G C IPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54 KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113
Query: 409 YFXXXXXXXXXXXXTSLCFVYPLDFARTRLAAD 507
YF TSLCFVYPLDFARTRLAAD
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAAD 146
Score = 122 bits (293), Expect = 4e-30
Identities = 52/64 (81%), Positives = 59/64 (92%)
Frame = +3
Query: 510 GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDKARGMLPDP 689
GK G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYD ARGMLPDP
Sbjct: 148 GKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDP 207
Query: 690 KNTP 701
K TP
Sbjct: 208 KKTP 211
Score = 107 bits (257), Expect = 1e-25
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = +2
Query: 71 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKQLLQVQHVSKQIAADQRYKGIVDAF 250
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVK LLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 251 VLSPRSR 271
V P+ +
Sbjct: 61 VRIPKEQ 67
Score = 25.8 bits (54), Expect = 0.40
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 525 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDK 665
++ + G+ +C +I K G + +RG +V +A F F DK
Sbjct: 50 EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDK 96
Score = 22.2 bits (45), Expect = 4.9
Identities = 24/100 (24%), Positives = 35/100 (35%)
Frame = +1
Query: 232 GYRRCLRPIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY 411
G CL I K G+ +RG +V +A F F D + + KKT F
Sbjct: 158 GLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLIS 215
Query: 412 FXXXXXXXXXXXXTSLCFVYPLDFARTRLAADAVREMASV 531
+ S YP D R R+ + R + +
Sbjct: 216 WGIAQVVTTVAGIVS----YPFDTVRRRMMMQSGRAKSEI 251
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 22.2 bits (45), Expect = 4.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 329 WVGKYLMTLAKLPRQNERRPCSLGIGR 249
WVG LA+L R ER+ GR
Sbjct: 228 WVGGESEALARLERHLERKAWVASFGR 254
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,045
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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