Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00742
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    27   2.7  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   4.7  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   6.3  

>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 392 IFQSNKLKEINYL*VL--LPISITSPKSHLCI 303
           + +SN ++E+ +L     L ++IT PK HLC+
Sbjct: 593 LVRSNDVREVGFLAEKRRLNVAITRPKRHLCV 624


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 440 FLLKFFIRLTFSLQIIIFQSNKLKEINYL*VLLPI 336
           FLLKFF+R+ F + +I+   +  K+   L VL PI
Sbjct: 296 FLLKFFVRVLFGVCMILIWKSFAKQA-LLAVLPPI 329


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +1

Query: 403 RLNVSL-IKNFNKNPCLIDLYGNVWMLYQNVD*LYE-INCDKESVMFKKFLRMF 558
           +L  SL ++  +K+PCLIDL       Y+N+  + E ++C+   +  ++  R+F
Sbjct: 69  KLRESLALRKISKHPCLIDLLETFMDPYRNIFLVMEFMDCNLFQLFKRRQGRLF 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,104
Number of Sequences: 5004
Number of extensions: 55182
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)