Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00742
         (722 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061123-1|AAL28671.1|  611|Drosophila melanogaster LD10456p pro...    34   0.17 
AE014134-3589|AAF57260.3|  611|Drosophila melanogaster CG3278-PA...    34   0.17 
M38442-1|AAA65184.1|  696|Drosophila melanogaster fs(1)Ya protei...    30   3.7  
AY069542-1|AAL39687.1|  696|Drosophila melanogaster LD26875p pro...    30   3.7  
AL021728-4|CAA16819.1|  695|Drosophila melanogaster EG:95B7.4,FB...    30   3.7  
AE014298-455|AAF45816.2|  696|Drosophila melanogaster CG2707-PA ...    30   3.7  
AE014298-2197|AAF48495.2| 5146|Drosophila melanogaster CG8184-PB...    29   6.4  

>AY061123-1|AAL28671.1|  611|Drosophila melanogaster LD10456p
           protein.
          Length = 611

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -3

Query: 258 TL*LYNHVCCRNIPKTEASMTLHL---LNYILFLIYKFFSFHC 139
           TL   + VC  N+PK+E S++  +   L+  LFL+YKFF   C
Sbjct: 261 TLFEIDDVCAENVPKSEKSVSHPVGKTLDVCLFLLYKFFDGKC 303


>AE014134-3589|AAF57260.3|  611|Drosophila melanogaster CG3278-PA,
           isoform A protein.
          Length = 611

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -3

Query: 258 TL*LYNHVCCRNIPKTEASMTLHL---LNYILFLIYKFFSFHC 139
           TL   + VC  N+PK+E S++  +   L+  LFL+YKFF   C
Sbjct: 261 TLFEIDDVCAENVPKSEKSVSHPVGKTLDVCLFLLYKFFDGKC 303


>M38442-1|AAA65184.1|  696|Drosophila melanogaster fs(1)Ya protein
           protein.
          Length = 696

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 637 NIRTETKSRVFLTNFLNDEDSSILNVKTFSKT 542
           N+R + KSRV    F++D  SSI N+ +FS +
Sbjct: 168 NMRWKAKSRVTHEEFISDSVSSIRNLSSFSNS 199


>AY069542-1|AAL39687.1|  696|Drosophila melanogaster LD26875p
           protein.
          Length = 696

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 637 NIRTETKSRVFLTNFLNDEDSSILNVKTFSKT 542
           N+R + KSRV    F++D  SSI N+ +FS +
Sbjct: 168 NMRWKAKSRVTHEEFISDSVSSIRNLSSFSNS 199


>AL021728-4|CAA16819.1|  695|Drosophila melanogaster
           EG:95B7.4,FBgn0000927;fs(1)Ya protein.
          Length = 695

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 637 NIRTETKSRVFLTNFLNDEDSSILNVKTFSKT 542
           N+R + KSRV    F++D  SSI N+ +FS +
Sbjct: 168 NMRWKAKSRVTHEEFISDSVSSIRNLSSFSNS 199


>AE014298-455|AAF45816.2|  696|Drosophila melanogaster CG2707-PA
           protein.
          Length = 696

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 637 NIRTETKSRVFLTNFLNDEDSSILNVKTFSKT 542
           N+R + KSRV    F++D  SSI N+ +FS +
Sbjct: 168 NMRWKAKSRVTHEEFISDSVSSIRNLSSFSNS 199


>AE014298-2197|AAF48495.2| 5146|Drosophila melanogaster CG8184-PB
           protein.
          Length = 5146

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 234 CCRNIPKTEASMTLHLLNYILFLIYKFFSFH 142
           C  N  +T+ ++ LH+LN+   LI   FS H
Sbjct: 82  CDTNFQETDVTLLLHVLNFTTLLIEHSFSRH 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,259,311
Number of Sequences: 53049
Number of extensions: 507505
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)