Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00742
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containi...    31   0.58 
At2g15350.1 68415.m01756 xyloglucan fucosyltransferase, putative...    28   5.5  

>At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 581

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 418 LIKNFNKNPCLIDLYGNVWMLYQNVD*LYEINCDKESVMFKKFL 549
           L  N     C++DLYG    L  +++ +Y  +C ++ V+++  L
Sbjct: 341 LTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLL 384


>At2g15350.1 68415.m01756 xyloglucan fucosyltransferase, putative
           (FUT10) identical to SP|Q9SJP6 Putative
           fucosyltransferase 10 (EC 2.4.1.-) (AtFUT10) (Fragment)
           {Arabidopsis thaliana}; similar to xyloglucan
           fucosyltransferase GI:5231145 from [Arabidopsis
           thaliana]
          Length = 440

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 523 LYRN*FHITNQHFDRASKHYHTSLSNMD 440
           L R  FH TN+ +D  +K+Y   LSN D
Sbjct: 210 LARYLFHPTNEVWDMVTKYYDAHLSNAD 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,370,316
Number of Sequences: 28952
Number of extensions: 247600
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)