Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00741
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   1.3  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   1.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.0  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 17  LSRDTPRPLCSRNCTCTSSTA--PSIT 91
           L++ +P P+   N T TSS+A  PS+T
Sbjct: 151 LTKTSPTPVSINNNTSTSSSASSPSVT 177


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 155 RLLDTLKFPSVTTVLI 108
           RL++TLKF S+T+ ++
Sbjct: 367 RLVETLKFQSITSAVV 382


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 14  FLSRDTPRPLCSRNCTCT 67
           F + D   P C +NC CT
Sbjct: 552 FCNGDNRPPDCGQNCMCT 569


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 96  WSVIDGAVDDVHVQFREHSGRG 31
           W  +  AVD+      +H GRG
Sbjct: 202 WGQLGAAVDESRTPRPKHDGRG 223


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 17  LSRDTPRPLCSRNCTCTSSTAPSITDHST 103
           LS D  +     N TC +S + S+T ++T
Sbjct: 663 LSIDNVQSTHVGNYTCLASNSASVTTYTT 691


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,229
Number of Sequences: 336
Number of extensions: 3288
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)