Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00741
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    31   0.20 
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    27   2.4  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   4.2  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.2  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    26   5.6  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   7.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.7  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   9.7  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   9.7  

>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +3

Query: 288 DYICVIDVGIFELSLRMEDKTNNPNDYPQVDLSASNNMVTVHTCWDSASALCRLLTYVAS 467
           D + +    +++L+L   D + N N YPQ+    ++N + +   +D       L  Y++ 
Sbjct: 270 DTVLLSKSSLYDLALYWPDNSFNANKYPQI---FNSNSIRIKPSYDDLINFKGLSRYLSF 326

Query: 468 DGDS 479
           DG+S
Sbjct: 327 DGES 330


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = -2

Query: 655 VVFGLLLHCFSHQIIDLLYLA----RRQLSYFFYWSIFQAN*WFQRMIRTYTGCLEEASY 488
           +V G+LL CF    +DL +L+     R ++Y F    F AN      I  Y        Y
Sbjct: 44  IVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIFLYLHIGRGLYY 103

Query: 487 GGWESPSEATY 455
           G ++ P   T+
Sbjct: 104 GSYKYPRTMTW 114


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 61  VHVVDCAIDYRPLYLPIRTVVTLGNFSVSSNLIAATN 171
           ++ VDC  DY  ++ PI+  +   NF +  N I A +
Sbjct: 362 INKVDCVSDYTTMFKPIKAYLQ-KNFLIPENRIHAVS 397


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 390 SNNMVTVHTCWDSASALCRL 449
           SNN   VH CW S  +L RL
Sbjct: 3   SNNSSLVHCCWVSPPSLTRL 22


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +1

Query: 58  HVHVVD----CAIDYRPLYLPIRTVVTLGN 135
           H++V D    CA + R +Y+PIR  + L N
Sbjct: 99  HIYVTDEQLKCAAEERDVYIPIRLDIELPN 128


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 569 EEIRELSPSEIQQVNDLMAEAMKEESK 649
           EEI++ SP E++Q  + + E  KE+ +
Sbjct: 35  EEIKKRSPEELKQAIEALREKAKEKKE 61


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 473 RLPASV*CFFKATSICSDHPLEPLVGLENRPIEEIRELSPSEIQQVNDLM 622
           R+P S+  FF +       PLE + GLE R +  + E    ++ ++ D +
Sbjct: 335 RVPCSIQLFFDSV------PLEKINGLEQRALRLLAETKQIDMNRMKDYL 378


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 126 RYHRSDRKVEWSVIDGAVDD 67
           R + +D+   W+VI GAVDD
Sbjct: 350 RGYLADQDCRWNVIAGAVDD 369


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 189 KAKARCVCRGYQVTRYAEVSQRYHR 115
           +A A CVC  +Q+ +     + YH+
Sbjct: 144 RATAYCVCEAFQLPKVKHFLKHYHK 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,048
Number of Sequences: 5004
Number of extensions: 57192
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)