Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00741
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0015 + 19281918-19282043,19282263-19282365,19282514-192825...    29   2.5  
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559     29   4.4  
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688...    28   5.8  
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    28   5.8  
08_01_0647 + 5596338-5596423,5597442-5597550,5598450-5598579,559...    28   7.6  

>11_06_0015 +
           19281918-19282043,19282263-19282365,19282514-19282581,
           19282687-19282842,19282950-19283078,19283161-19283278,
           19283368-19283462,19283579-19283731,19283822-19283917,
           19284095-19284196
          Length = 381

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 156 DSRDKHIVPSLSSTGVYAVSVLLAQH*TEHDRSQDDDKQPDVNKD 290
           D +  H++  L +T V+A   L A   TE  +  DDD   D + D
Sbjct: 95  DDKTAHVIIGLDNTQVFADLDLAAASATEFAQEDDDDDDDDDDSD 139


>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
          Length = 789

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 414 TCWDSASALCRLLTYVASDGDSQPPYDASSRQ 509
           T WD+ +AL R +  +A+ G + PP +A +++
Sbjct: 524 TSWDNLAALLRGVRRLATSGRAAPPLEARAKE 555


>09_03_0047 -
           11867302-11867356,11867461-11868032,11868485-11868873,
           11869018-11869331,11871028-11871382,11872004-11872076
          Length = 585

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 506 P*RSIIRRLGVSI*GHVREESTEGASRVPASVYCHH 399
           P +S+I  +G++  G V  E++ G  + P S++CHH
Sbjct: 337 PRQSLIETVGITEAG-VFIEASSGFGQSPESIHCHH 371


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 660 QALCLDSSFIASAIRSLTCCISLGD 586
           +A  +DSSF+ + IR+  C ++LGD
Sbjct: 647 KATDIDSSFLKAQIRAANCLLALGD 671


>08_01_0647 +
           5596338-5596423,5597442-5597550,5598450-5598579,
           5599241-5600016,5600342-5600497,5600627-5600722
          Length = 450

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = -2

Query: 565 WSIFQAN*WFQRMIRTYTGCLEEASYGGWES---PSEATYVRSRQRALAESQQVCTVTML 395
           ++I +AN W    I+     L+ A YG WE          + SR     E   V     +
Sbjct: 212 FAIDRANYWINHAIKHNAKVLKFAEYGKWEPFYLDPNLVELSSRYLETLELTNVALDATI 271

Query: 394 FDALRSTCG*SFGLLVLSSILKESSNIPTS 305
           F+ L + C  +   ++L+  L E   I +S
Sbjct: 272 FNQLANACP-ALQNMLLTDCLLEVEEISSS 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,791,125
Number of Sequences: 37544
Number of extensions: 395546
Number of successful extensions: 1064
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)