Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00741
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.020
SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_46502| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)                     28   5.9  
SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.9  
SB_58604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)               28   7.8  
SB_45579| Best HMM Match : Calx-beta (HMM E-Value=1.8e-23)             28   7.8  
SB_41499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1750

 Score = 31.1 bits (67), Expect(2) = 0.020
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 285  KDYICVIDVGIFELSLRMED 344
            ++Y+CV+D+G+F+LSL   D
Sbjct: 1074 RNYVCVMDIGLFQLSLLTSD 1093



 Score = 24.2 bits (50), Expect(2) = 0.020
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 456  YVASDGDSQPPYDASSRQP 512
            Y+A+DGD  P Y+     P
Sbjct: 1098 YIAADGDMVPSYETEEPDP 1116


>SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 520 TYTGCLEEASYGGWESPSEATYVRSRQRALAESQQV 413
           T   C E+  Y   E   EATYV S  R L E+ ++
Sbjct: 124 TMDSCYEDPDYLRIEPTEEATYVNSEARGLVENLEI 159


>SB_46502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 79  AIDYRPLYLPIRTVVTLGNFSVSSNLIAATNTSCLRFLAQECTL 210
           ++ + P Y+ I+ +++L N +     I + +TS  RF+  E  L
Sbjct: 91  SLHHNPFYMLIQEIISLSNVTTLIERIPSDSTSVNRFVVSEAIL 134


>SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)
          Length = 676

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +3

Query: 141 RIE*PDSRDKHIVPSLSSTGVYAVSVLLAQH*TEHDRSQDDDKQPDVNKDYICVI 305
           R+E   + +  ++  ++ T  + V + L +   E  +  DDD+QP+V+   I ++
Sbjct: 104 RLEQETTHNSELLKRITETEKHLVEIGLRKKEAEESKRGDDDEQPEVSHGKIRIL 158


>SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 105 KVEWSVIDGAVDDVHVQFREHSGRGVSRDRK 13
           KV W   DG  D +      H+G G+S   K
Sbjct: 809 KVYWQTADGVEDSIQGPMASHTGHGISTKLK 839


>SB_58604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 28  YAPSTVLSELHV--HVVDCAIDYRPLY 102
           Y    V   +H+  H++DC +DY P+Y
Sbjct: 377 YGKEKVTPNMHLQTHILDCVLDYGPVY 403


>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
          Length = 469

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 159 SRDKHIVPSLSSTGVYAVSVLLAQH*TEHDRSQDDDKQPDVNKD 290
           +R  +++P+     VYA    L +    HD  QD D   DV +D
Sbjct: 368 ARQVNLIPADRPQDVYAEVAKLVEEARLHDAEQDGDDSCDVGED 411


>SB_45579| Best HMM Match : Calx-beta (HMM E-Value=1.8e-23)
          Length = 253

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 258 DDDKQPDVNKDYICVIDVGIFELSLRMEDKTNNPNDYPQVDLSA-SNNMVT 407
           DD  + D     + +   G  ++SL ++  TNN   +  VD +A S+N VT
Sbjct: 112 DDQVEEDTGYVTVNITKTGTSDISLDVQLSTNNGTAFSPVDYTAMSDNSVT 162


>SB_41499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 437 PLSTPHVRGLRWRLPASV*CFFKATSICSDHPLEPLVGLENRPIEEIRELSPSE 598
           P S PH+R LR  L  +     +A S C D P E     +   + E  E +PS+
Sbjct: 16  PFSPPHLRCLRRTLSRTDLVTTEAESGCWDEPQETASNEDMEEMVEWYEATPSD 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,408,300
Number of Sequences: 59808
Number of extensions: 457297
Number of successful extensions: 1600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)