Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00741
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    36   0.026
AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical...    29   3.9  
Z54284-5|CAA91062.1|  444|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
 Frame = +1

Query: 10   DFPVPGYAPSTVLSELHVHVVDCAIDYRPLYL----PIRTVVTLGNFSVSSNLIAATNTS 177
            D+ +PGY   +V ++LH+   +  I Y   ++     ++   TLG  +++S++++  N S
Sbjct: 1134 DYAIPGYELPSVSTDLHICFENAIIGYDHAWVNPNSKLKLRATLGQCNLASSIVSDMNIS 1193

Query: 178  CLRFLAQECTLFLS 219
                + + C L++S
Sbjct: 1194 KTLCIFESCRLYMS 1207


>AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical
           protein Y53F4B.25 protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 647 WTPPSLLQPSDH*PAVSRSETA 582
           WTPP+LLQP+   P   R+E++
Sbjct: 273 WTPPTLLQPNPIPPPPQRNESS 294


>Z54284-5|CAA91062.1|  444|Caenorhabditis elegans Hypothetical
           protein D2085.6 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 226 ASRTETAYTPVLESEGTMCLSRLSGY 149
           A+RT+  Y   +ESE T  L RL GY
Sbjct: 369 AARTQVIYQKAVESEPTGRLGRLKGY 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,494
Number of Sequences: 27780
Number of extensions: 322059
Number of successful extensions: 861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)