Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00741
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06455.1 68416.m00747 splicing factor-related contains weak s...    33   0.17 
At2g34670.1 68415.m04259 proline-rich family protein contains pr...    28   4.8  
At3g14880.1 68416.m01881 DNA-binding protein-related low similar...    28   6.4  
At3g05360.1 68416.m00584 disease resistance family protein / LRR...    28   6.4  
At4g15980.1 68417.m02426 pectinesterase family protein contains ...    27   8.4  

>At3g06455.1 68416.m00747 splicing factor-related contains weak
           similarity to Swiss-Prot:Q12874 splicing factor 3A
           subunit 3 (Spliceosome associated protein 61, SAP 61,
           SF3a60) [Homo sapiens]
          Length = 366

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 32/98 (32%), Positives = 40/98 (40%)
 Frame = -3

Query: 330 KRARIFQHRSRKCSLY*HLAVYRRLGNGRVRFSVVQVGQKQRTLLC*KAKARCVCRGYQV 151
           K    ++  S KC L  HLA+     NG  R      G+K  T    K+K   +  G   
Sbjct: 136 KNVNKYKGGSDKCILAVHLALNETFKNGNKR-----KGKKMGTAESEKSKRIKIWNG--- 187

Query: 150 TRYAEVSQRYHRSDRKVEWSVIDGAVDDVHVQFREHSG 37
            R  E S     SD + E SV+ G VD  H    E SG
Sbjct: 188 KRAVEDSDSDDSSDEEDEKSVVGGQVDSDHKDTDESSG 225


>At2g34670.1 68415.m04259 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 561

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 321 ELSLRMEDKTNNPNDYPQVDLS------ASNNMVTVHTCWDSASALCRLL 452
           ++ + +  + N+  DYP +DLS      A N + T  TCW   ++ C+L+
Sbjct: 442 QVQIHISQQLNHLPDYPSIDLSSEYKRQAVNELETEVTCW--YNSFCKLV 489


>At3g14880.1 68416.m01881 DNA-binding protein-related low similarity
           to tumor-related protein [Nicotiana glauca x Nicotiana
           langsdorffii] GI:688423, SP|O24160 TGACG-sequence
           specific DNA-binding protein TGA-2.1 {Nicotiana tabacum}
          Length = 237

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 572 EIRELSPSEIQQVNDLMAEAMKEES 646
           ++ +LSPS+ + V++L  E +KEE+
Sbjct: 126 DLSDLSPSQFRTVSELQCETVKEEN 150


>At3g05360.1 68416.m00584 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to
           elicitor-inducible LRR receptor-like protein EILP
           [Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to
           Cf-2.2 [Lycopersicon pimpinellifolium]
           gi|1184077|gb|AAC15780
          Length = 786

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 478 PSLRMMLLQGNQYMF*SSFGTIS 546
           PSL+++ L+GNQ+M    FG IS
Sbjct: 256 PSLQIVYLEGNQFMGPIKFGNIS 278


>At4g15980.1 68417.m02426 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 701

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 521 SDHPLEPLVGLENRPIEEIRELSPSEIQQVNDLMAEAMKEESK 649
           S++P +     ENRP++ +R+L+P  + +++ L    + EE +
Sbjct: 326 SENPPQKSTSSENRPLDPLRKLNP--LNKLDSLKDRHLSEEGE 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,791,866
Number of Sequences: 28952
Number of extensions: 306356
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)