Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00740
(755 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 144 2e-33
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 134 2e-30
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 119 7e-26
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 116 6e-25
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 116 6e-25
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 115 1e-24
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 114 3e-24
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 114 3e-24
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 111 1e-23
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 111 2e-23
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 110 3e-23
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 110 3e-23
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 108 2e-22
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 108 2e-22
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 107 3e-22
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 107 4e-22
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 106 5e-22
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 105 1e-21
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 102 8e-21
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 99 6e-20
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 97 3e-19
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 97 5e-19
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 94 3e-18
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 92 2e-17
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 92 2e-17
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 92 2e-17
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 92 2e-17
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 84 3e-15
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 84 4e-15
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 81 2e-14
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 75 2e-12
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 73 6e-12
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 71 2e-11
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 67 5e-10
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 65 2e-09
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 63 8e-09
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 62 2e-08
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 60 8e-08
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 57 5e-07
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 56 9e-07
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 54 3e-06
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 54 4e-06
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 53 7e-06
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 50 5e-05
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 49 1e-04
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 49 1e-04
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 48 3e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 3e-04
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 48 3e-04
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 48 3e-04
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 48 3e-04
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 47 6e-04
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 46 8e-04
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 45 0.002
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 45 0.002
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 44 0.003
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 44 0.003
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 44 0.003
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 44 0.004
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 43 0.007
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 43 0.007
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 43 0.007
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br... 43 0.009
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 43 0.009
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 42 0.012
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 42 0.016
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 42 0.016
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 42 0.022
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 41 0.029
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 41 0.038
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 41 0.038
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 40 0.050
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 40 0.050
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 40 0.050
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 40 0.050
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 40 0.088
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 40 0.088
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 39 0.12
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 39 0.15
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 38 0.20
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 38 0.20
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 38 0.20
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 38 0.27
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 38 0.35
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 38 0.35
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 37 0.47
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 37 0.47
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 37 0.62
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 37 0.62
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 36 1.1
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 36 1.4
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 35 1.9
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 35 1.9
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 35 1.9
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 34 4.4
UniRef50_Q1E8L1 Cluster: Putative uncharacterized protein; n=1; ... 34 4.4
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 34 4.4
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 33 5.8
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 33 5.8
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 33 7.6
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 33 7.6
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 144 bits (350), Expect = 2e-33
Identities = 84/167 (50%), Positives = 91/167 (54%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIF +
Sbjct: 92 PRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAG 151
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ +PLFV AVGITAF AGAIT+LLTDRN
Sbjct: 152 ISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLTDRN 211
Query: 611 LNTSFFDPAGGGDPILYQHXXXXXXXXXXXXXXYQDLV*FLILFHKK 751
LNTSFFDPAGGGDPILYQH QDLV F +LF KK
Sbjct: 212 LNTSFFDPAGGGDPILYQHLFWFFGHPKLMFSFSQDLVSFHMLFPKK 258
Score = 89.8 bits (213), Expect = 6e-17
Identities = 67/173 (38%), Positives = 74/173 (42%), Gaps = 2/173 (1%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 9 HKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVM 68
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTPH 362
N LVPL+LGAPD+AFP F PP L + + +T +
Sbjct: 69 PIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSI--VENGAGTGWTVY 126
Query: 363 FHLISHIEE--DP*ILLFFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDHYP 515
L S+I L FSLHLAGISS SFD P
Sbjct: 127 PPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMP 179
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 134 bits (325), Expect = 2e-30
Identities = 74/139 (53%), Positives = 80/139 (57%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIF +
Sbjct: 68 PRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAG 127
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
I +PLF+ AVGITA AGAIT+LLTDRN
Sbjct: 128 ISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRN 187
Query: 611 LNTSFFDPAGGGDPILYQH 667
LNTSFFDPAGGGDPILYQH
Sbjct: 188 LNTSFFDPAGGGDPILYQH 206
Score = 77.8 bits (183), Expect = 3e-13
Identities = 57/145 (39%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Frame = +3
Query: 87 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPE*II 266
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFP
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 267 *DFDSYPPPLYY*FQEEL*KMVQEQDEQFTPHFHLISHIEE--DP*ILLFFSLHLAGISS 440
F PP L + + +T + L S+I L FSLHLAGISS
Sbjct: 73 MSFWLLPPSLILLISSSI--VENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 130
Query: 441 XXXXXXXXXXXXXXXXXXXSFDHYP 515
SFD P
Sbjct: 131 ILGAINFITTIINMRINKMSFDQMP 155
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 119 bits (287), Expect = 7e-26
Identities = 66/134 (49%), Positives = 77/134 (57%)
Frame = -3
Query: 672 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGNDQMXX 493
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G M
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 492 XXXXXXXXX**NXXXXXXXXXXLNVVKKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 313
+KI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 312 LEINNIREGGRSQN 271
L + ++EGG +QN
Sbjct: 120 LNKSKVKEGGSNQN 133
Score = 91.5 bits (217), Expect = 2e-17
Identities = 50/93 (53%), Positives = 57/93 (61%)
Frame = -2
Query: 295 KGGG*ESKSYIIYSGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SS 116
K GG + GNA+SGAP++ GTNQFPNPP KA AVT+ L I S
Sbjct: 126 KEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSF 184
Query: 115 PINDPGFPNSARIKSLKDVPIIPDQIPKIKYNV 17
PI PG PNSARIKSL DVP +P PK+KYNV
Sbjct: 185 PIKLPGCPNSARIKSLSDVPTMPAHAPKMKYNV 217
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 116 bits (279), Expect = 6e-25
Identities = 66/139 (47%), Positives = 73/139 (52%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NNI F VE GAGTG TVYPPLS +H G SVDLAIF S
Sbjct: 95 PRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSG 154
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ LPLFV A+ +TA AGAIT+LLTDRN
Sbjct: 155 ISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRN 214
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSF+DPAGGGDPILYQH
Sbjct: 215 FNTSFYDPAGGGDPILYQH 233
Score = 59.7 bits (138), Expect = 8e-08
Identities = 48/147 (32%), Positives = 57/147 (38%), Gaps = 2/147 (1%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTP 359
N LVP+++GAPD+AFP F PP L + P
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 360 HFHLISHIEEDP*ILLFFSLHLAGISS 440
+ L FSLHL+GISS
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISS 157
Score = 48.0 bits (109), Expect = 3e-04
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILI+PGFG++SHI+S
Sbjct: 238 FGHPEVYILIIPGFGMVSHIVS 259
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 116 bits (279), Expect = 6e-25
Identities = 66/139 (47%), Positives = 73/139 (52%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NNI F VE GAGTG TVYPPLS +H G SVDLAIF S
Sbjct: 95 PRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSG 154
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ LPLFV A+ +TA AGAIT+LLTDRN
Sbjct: 155 ISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRN 214
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSF+DPAGGGDPILYQH
Sbjct: 215 FNTSFYDPAGGGDPILYQH 233
Score = 59.7 bits (138), Expect = 8e-08
Identities = 48/147 (32%), Positives = 57/147 (38%), Gaps = 2/147 (1%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTP 359
N LVP+++GAPD+AFP F PP L + P
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 360 HFHLISHIEEDP*ILLFFSLHLAGISS 440
+ L FSLHL+GISS
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISS 157
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 115 bits (276), Expect = 1e-24
Identities = 67/139 (48%), Positives = 74/139 (53%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ F VE+GAGTG TVYPPLS N AH G SVDLAIF +
Sbjct: 78 PRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAG 137
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
I + LFV +V ITA AGAIT+LLTDRN
Sbjct: 138 VSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRN 197
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFFDPAGGGDPILYQH
Sbjct: 198 FNTSFFDPAGGGDPILYQH 216
Score = 65.7 bits (153), Expect = 1e-09
Identities = 47/120 (39%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Frame = +3
Query: 87 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPE*II 266
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFP
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 267 *DFDSYPPPLYY*FQEEL*KMVQEQDEQFTPHFHLISH-IEEDP*I-LLFFSLHLAGISS 440
F PP L + +T + L + P + L FSLHLAG+SS
Sbjct: 83 MSFWFLPPSLSLLLMSA--AVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSS 140
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 114 bits (274), Expect = 3e-24
Identities = 70/139 (50%), Positives = 76/139 (54%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR N+ F VE GAGTG TV PPLS+NIAH G SVDLAIF +
Sbjct: 14 PRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVDLAIFSLHMAG 73
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+PLFV AV ITA AGAIT+LLTDRN
Sbjct: 74 VXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAGAITMLLTDRN 133
Query: 611 LNTSFFDPAGGGDPILYQH 667
+NTSFFDPAGGGDPILYQH
Sbjct: 134 INTSFFDPAGGGDPILYQH 152
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 114 bits (274), Expect = 3e-24
Identities = 65/139 (46%), Positives = 75/139 (53%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NNI F +VE G+GTG TVYPPLS +H G +VDLAIF S
Sbjct: 98 PRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSG 157
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ LPLFV +V +TAF AGAIT+LLTDRN
Sbjct: 158 VSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRN 217
Query: 611 LNTSFFDPAGGGDPILYQH 667
NT+FFDPAGGGDPILYQH
Sbjct: 218 FNTTFFDPAGGGDPILYQH 236
Score = 64.9 bits (151), Expect = 2e-09
Identities = 47/148 (31%), Positives = 60/148 (40%), Gaps = 2/148 (1%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 176
HKDIGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 13 HKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFM 72
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFT 356
N VP+++GAPD+AFP F PP L L ++
Sbjct: 73 VMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVY 132
Query: 357 PHFHLISHIEEDP*ILLFFSLHLAGISS 440
P I+ L FSLHL+G+SS
Sbjct: 133 PPLSGITSHSGGAVDLAIFSLHLSGVSS 160
Score = 50.4 bits (115), Expect = 5e-05
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILPGFGIISHI+S
Sbjct: 241 FGHPEVYILILPGFGIISHIVS 262
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 111 bits (268), Expect = 1e-23
Identities = 64/139 (46%), Positives = 74/139 (53%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NNI F +VE GAGTG TVYPPL+S AH G SVD+AIF +
Sbjct: 96 PRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAG 155
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ +PLFV +V ITA AGAIT+LLTDR
Sbjct: 156 LSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLTDRY 215
Query: 611 LNTSFFDPAGGGDPILYQH 667
NT+FFDPAGGGDPILYQH
Sbjct: 216 FNTTFFDPAGGGDPILYQH 234
Score = 75.8 bits (178), Expect = 1e-12
Identities = 50/146 (34%), Positives = 62/146 (42%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 13 HKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVM 72
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTPH 362
N VPL++GAPD+AFP F PP L+ L + P
Sbjct: 73 PTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPP 132
Query: 363 FHLISHIEEDP*ILLFFSLHLAGISS 440
I + FSLHLAG+SS
Sbjct: 133 LASIQAHSGGSVDMAIFSLHLAGLSS 158
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 111 bits (266), Expect = 2e-23
Identities = 68/142 (47%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF---FTT 421
PR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDLAIF
Sbjct: 96 PRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAG 155
Query: 422 FSXXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLT 601
S I Y PLFV +V ITA A IT+LLT
Sbjct: 156 ISSILGAINFITTAINMKPPAISQY---QTPLFVWSVLITAVLLLLSLPVLAAGITMLLT 212
Query: 602 DRNLNTSFFDPAGGGDPILYQH 667
DRNLNT+FFDPAGGGDPILYQH
Sbjct: 213 DRNLNTTFFDPAGGGDPILYQH 234
Score = 79.4 bits (187), Expect = 9e-14
Identities = 56/147 (38%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 13 HKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVM 72
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQD-EQFTP 359
N LVPL++GAPD+AFP F PP + + P
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPP 132
Query: 360 HFHLISHIEEDP*ILLFFSLHLAGISS 440
++H L FSLHLAGISS
Sbjct: 133 LAGNLAHAGASV-DLAIFSLHLAGISS 158
Score = 47.6 bits (108), Expect = 3e-04
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILPGFG+ISH+++
Sbjct: 239 FGHPEVYILILPGFGMISHVVT 260
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 110 bits (265), Expect = 3e-23
Identities = 67/142 (47%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF---FTT 421
PR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IF
Sbjct: 95 PRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAG 154
Query: 422 FSXXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLT 601
S TI Y PLFV AV +TA A IT+LLT
Sbjct: 155 VSSILGAINFITTTINMKPPTISQY---QTPLFVWAVLVTAVLLLLSLPVLAAGITMLLT 211
Query: 602 DRNLNTSFFDPAGGGDPILYQH 667
DRNLNT+FFDPAGGGDPILYQH
Sbjct: 212 DRNLNTTFFDPAGGGDPILYQH 233
Score = 75.8 bits (178), Expect = 1e-12
Identities = 55/147 (37%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPP-LYY*FQEEL*KMVQEQDEQFTP 359
N LVPL++GAPD+AFP F PP L + + P
Sbjct: 72 PILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 360 HFHLISHIEEDP*ILLFFSLHLAGISS 440
++H L FSLHLAG+SS
Sbjct: 132 LAGNLAHAGASV-DLTIFSLHLAGVSS 157
Score = 48.8 bits (111), Expect = 1e-04
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILPGFGIISH+++
Sbjct: 238 FGHPEVYILILPGFGIISHVVA 259
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 110 bits (265), Expect = 3e-23
Identities = 63/139 (45%), Positives = 74/139 (53%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NNI F +VE G GTG TVYPPLSS +H G +VDLAIF S
Sbjct: 103 PRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISG 162
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ +PLFV ++ +TAF AGAIT+LLTDRN
Sbjct: 163 ASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLLTDRN 222
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFFD +GGGDPILYQH
Sbjct: 223 FNTSFFDASGGGDPILYQH 241
Score = 62.1 bits (144), Expect = 1e-08
Identities = 46/148 (31%), Positives = 60/148 (40%), Gaps = 2/148 (1%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 176
HKDIGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 18 HKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFM 77
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFT 356
N LVP+++G+PD+AFP F PP L L ++
Sbjct: 78 VMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVY 137
Query: 357 PHFHLISHIEEDP*ILLFFSLHLAGISS 440
P I L FSLH++G SS
Sbjct: 138 PPLSSIQSHSGGAVDLAIFSLHISGASS 165
Score = 49.2 bits (112), Expect = 1e-04
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILPGFG+ISHI+S
Sbjct: 246 FGHPEVYILILPGFGMISHIVS 267
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 108 bits (259), Expect = 2e-22
Identities = 62/139 (44%), Positives = 73/139 (52%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PRINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF +
Sbjct: 96 PRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTS 155
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ LPLFV ++ ITAF + IT+LL DRN
Sbjct: 156 ISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRN 215
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFF+ +GGGDPILY+H
Sbjct: 216 FNTSFFEVSGGGDPILYEH 234
Score = 49.2 bits (112), Expect = 1e-04
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILI+PGFGIISH++S
Sbjct: 239 FGHPEVYILIIPGFGIISHVVS 260
Score = 41.9 bits (94), Expect = 0.016
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFP 254
N L+PL++GA D AFP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFP 96
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 108 bits (259), Expect = 2e-22
Identities = 62/139 (44%), Positives = 73/139 (52%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PRINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF +
Sbjct: 96 PRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTS 155
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ LPLFV ++ ITAF + IT+LL DRN
Sbjct: 156 ISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRN 215
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFF+ +GGGDPILY+H
Sbjct: 216 FNTSFFEVSGGGDPILYEH 234
Score = 41.9 bits (94), Expect = 0.016
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFP 254
N L+PL++GA D AFP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFP 96
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 107 bits (257), Expect = 3e-22
Identities = 62/139 (44%), Positives = 71/139 (51%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IF +
Sbjct: 95 PRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAG 154
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
PLFV +V +TA A IT+LLTDRN
Sbjct: 155 VSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRN 214
Query: 611 LNTSFFDPAGGGDPILYQH 667
LNT+FFDPAGGGDPILYQH
Sbjct: 215 LNTTFFDPAGGGDPILYQH 233
Score = 75.8 bits (178), Expect = 1e-12
Identities = 55/147 (37%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPP-LYY*FQEEL*KMVQEQDEQFTP 359
N LVPL++GAPD+AFP F PP L + + P
Sbjct: 72 PVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 360 HFHLISHIEEDP*ILLFFSLHLAGISS 440
++H L FSLHLAG+SS
Sbjct: 132 LAGNLAHAGASV-DLTIFSLHLAGVSS 157
Score = 47.6 bits (108), Expect = 3e-04
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILPGFG+ISH+++
Sbjct: 238 FGHPEVYILILPGFGMISHVVT 259
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 107 bits (256), Expect = 4e-22
Identities = 62/139 (44%), Positives = 71/139 (51%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ F +VE GAGTG TVYPPL+ N +H G SVDL IF +
Sbjct: 95 PRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAG 154
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
PLFV +V ITA A IT+LLTDRN
Sbjct: 155 VSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRN 214
Query: 611 LNTSFFDPAGGGDPILYQH 667
LNT+FFDPAGGGDPILYQH
Sbjct: 215 LNTTFFDPAGGGDPILYQH 233
Score = 76.6 bits (180), Expect = 6e-13
Identities = 55/147 (37%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 12 HKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVM 71
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQD-EQFTP 359
N LVPL++GAPD+AFP F PP L + + + P
Sbjct: 72 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPP 131
Query: 360 HFHLISHIEEDP*ILLFFSLHLAGISS 440
SH L FSLHLAG+SS
Sbjct: 132 LAGNYSHPGASV-DLTIFSLHLAGVSS 157
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILPGFG+ISHI++
Sbjct: 238 FGHPEVYILILPGFGMISHIVT 259
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 106 bits (255), Expect = 5e-22
Identities = 62/139 (44%), Positives = 72/139 (51%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PRIN+I F +VE+GAGTG TVYPPLSS AH G SVDLAIF +
Sbjct: 96 PRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTS 155
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ +PLFV A+ ITAF + IT+LL DRN
Sbjct: 156 ISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITMLLMDRN 215
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFF+ AGGGDPI YQH
Sbjct: 216 FNTSFFEVAGGGDPIFYQH 234
Score = 50.4 bits (115), Expect = 5e-05
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +1
Query: 649 PNFISTFILIFGHPEVYILILPGFGIISHIIS 744
P F FGHPEVYILI+PGFGI+SHI+S
Sbjct: 229 PIFYQHAFWFFGHPEVYILIIPGFGIVSHIVS 260
Score = 39.5 bits (88), Expect = 0.088
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI +Y EL PGS L G+ Q++N +V HA
Sbjct: 12 KDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLA 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFP 254
N ++PL++GA D++FP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDMSFP 96
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 105 bits (252), Expect = 1e-21
Identities = 61/139 (43%), Positives = 72/139 (51%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PRINNI F +VE+GAGTG TVYPPL+S AH G SVDLAIF +
Sbjct: 96 PRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTS 155
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ LPLFV A+ ITA + +T+LL DRN
Sbjct: 156 ISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTMLLLDRN 215
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFF+ AGGGDPILY+H
Sbjct: 216 FNTSFFEVAGGGDPILYEH 234
Score = 39.9 bits (89), Expect = 0.066
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL PG L G++Q++N +V HA
Sbjct: 12 KDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMV 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFP 254
N ++PL++GA D AFP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDTAFP 96
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 102 bits (245), Expect = 8e-21
Identities = 58/139 (41%), Positives = 70/139 (50%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ F + G GTG TVYPPLS + H G SVDL IF +
Sbjct: 79 PRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAG 138
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ + + LF +V ITA AGAIT+LLTDRN
Sbjct: 139 ASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRN 198
Query: 611 LNTSFFDPAGGGDPILYQH 667
+NTSFFDP+GGGDPILYQH
Sbjct: 199 MNTSFFDPSGGGDPILYQH 217
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/56 (51%), Positives = 37/56 (66%)
Frame = +3
Query: 87 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 254
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FP
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFP 79
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIISQE 750
FGHPEVYILILPGFGIISH+I E
Sbjct: 222 FGHPEVYILILPGFGIISHMIFNE 245
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 99 bits (238), Expect = 6e-20
Identities = 60/139 (43%), Positives = 69/139 (49%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NNI + +ENG GTG T+YPPLS +H G SVDLAIF S
Sbjct: 96 PRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSG 155
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ L LF AV ITA AG IT++LTDRN
Sbjct: 156 ISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVLTDRN 215
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFF+ AGGGDPILYQH
Sbjct: 216 FNTSFFEVAGGGDPILYQH 234
Score = 50.8 bits (116), Expect = 4e-05
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 182
KDIG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 13 KDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVM 72
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N L+PL LG PD+ FP
Sbjct: 73 PALIGGFGNFLLPLGLGGPDMGFP 96
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILI+PGFGIIS IS
Sbjct: 239 FGHPEVYILIIPGFGIISTTIS 260
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 97.5 bits (232), Expect = 3e-19
Identities = 57/139 (41%), Positives = 66/139 (47%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN F E G GTG TVYPPLSS +H G SVDL IF
Sbjct: 99 PRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVG 158
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ LPLFV +V +T+F A AIT+LL DRN
Sbjct: 159 IGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLLFDRN 218
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSF+DP GGGD +LYQH
Sbjct: 219 FNTSFYDPVGGGDVVLYQH 237
Score = 48.4 bits (110), Expect = 2e-04
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILPGFG++SHII+
Sbjct: 242 FGHPEVYILILPGFGLVSHIIA 263
Score = 42.3 bits (95), Expect = 0.012
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 176
HK IG LY EL PG L G+ YN I T H
Sbjct: 14 HKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVV 73
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFP 254
N VP+++GAPD++FP
Sbjct: 74 VMPILFGGFGNYFVPILIGAPDMSFP 99
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 96.7 bits (230), Expect = 5e-19
Identities = 52/139 (37%), Positives = 69/139 (49%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ + +++ GAG G T YPP+S+ R+VD AIF S
Sbjct: 201 PRLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSG 260
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ +PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 261 ASSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRN 320
Query: 611 LNTSFFDPAGGGDPILYQH 667
T+FFDPAGGGDPIL+QH
Sbjct: 321 FGTTFFDPAGGGDPILFQH 339
Score = 45.2 bits (102), Expect = 0.002
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYI+ILP FG+ISHI++
Sbjct: 344 FGHPEVYIVILPAFGVISHIVA 365
Score = 34.7 bits (76), Expect = 2.5
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 84 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 254
A LG L G D ++N ++T H N +PL++GAPD+AFP
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 94.3 bits (224), Expect = 3e-18
Identities = 57/139 (41%), Positives = 67/139 (48%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ + I+ENG GTG T+YPPLS +H VDL IF S
Sbjct: 122 PRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSG 181
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ L LF AV ITA A AIT+LLTDRN
Sbjct: 182 ISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLLTDRN 241
Query: 611 LNTSFFDPAGGGDPILYQH 667
LNTSF++ AGGGD ILYQH
Sbjct: 242 LNTSFYELAGGGDAILYQH 260
Score = 47.2 bits (107), Expect = 4e-04
Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 2/147 (1%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 182
KDI LY EL PG I D+Q+YN+I+T+H
Sbjct: 39 KDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVM 98
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLY-Y*FQEEL*KMVQEQDEQFTP 359
N L+P+++G PD+AFP + P L+ + F + V + P
Sbjct: 99 PALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPP 158
Query: 360 HFHLISHIEEDP*ILLFFSLHLAGISS 440
+ SH L F LHL+GISS
Sbjct: 159 LSGIQSHSSMGV-DLGIFGLHLSGISS 184
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILI+PGFGIIS +IS
Sbjct: 265 FGHPEVYILIIPGFGIISTVIS 286
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 91.9 bits (218), Expect = 2e-17
Identities = 52/139 (37%), Positives = 68/139 (48%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF S
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSG 172
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
LPLFV +V ITA A +T+LL DRN
Sbjct: 173 LSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRN 232
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFF +GGGDP+LY+H
Sbjct: 233 FNTSFFVVSGGGDPLLYEH 251
Score = 39.9 bits (89), Expect = 0.066
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYILI+P FG++S I+
Sbjct: 256 FGHPEVYILIVPVFGVVSQIV 276
Score = 37.5 bits (83), Expect = 0.35
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 96 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 254
NP L+ + Q++N ++TAHA N LVPL +G+ D AFP
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFP 113
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 91.9 bits (218), Expect = 2e-17
Identities = 52/139 (37%), Positives = 68/139 (48%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF S
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSG 172
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
LPLFV +V ITA A +T+LL DRN
Sbjct: 173 LSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRN 232
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFF +GGGDP+LY+H
Sbjct: 233 FNTSFFVVSGGGDPLLYEH 251
Score = 39.9 bits (89), Expect = 0.066
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYILI+P FG++S I+
Sbjct: 256 FGHPEVYILIVPVFGVVSQIV 276
Score = 37.5 bits (83), Expect = 0.35
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 96 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 254
NP L+ + Q++N ++TAHA N LVPL +G+ D AFP
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFP 113
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 91.9 bits (218), Expect = 2e-17
Identities = 52/139 (37%), Positives = 68/139 (48%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF S
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSG 172
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
LPLFV +V ITA A +T+LL DRN
Sbjct: 173 LSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRN 232
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFF +GGGDP+LY+H
Sbjct: 233 FNTSFFVVSGGGDPLLYEH 251
Score = 37.5 bits (83), Expect = 0.35
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 96 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 254
NP L+ + Q++N ++TAHA N LVPL +G+ D AFP
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFP 113
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 91.9 bits (218), Expect = 2e-17
Identities = 52/139 (37%), Positives = 68/139 (48%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF S
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSG 172
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
LPLFV +V ITA A +T+LL DRN
Sbjct: 173 LSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRN 232
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSFF +GGGDP+LY+H
Sbjct: 233 FNTSFFVVSGGGDPLLYEH 251
Score = 37.5 bits (83), Expect = 0.35
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 96 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 254
NP L+ + Q++N ++TAHA N LVPL +G+ D AFP
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFP 113
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 84.2 bits (199), Expect = 3e-15
Identities = 55/143 (38%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFFT 418
PR+NNI F V NGAGTG TVY PLS++ G +VD+AI
Sbjct: 135 PRMNNISFWLLIPAFALLLGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSL 193
Query: 419 TFSXXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILL 598
+ + +PLFV +V +TAF A AIT+LL
Sbjct: 194 HIAGASSILGAINFITTILNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLL 253
Query: 599 TDRNLNTSFFDPAGGGDPILYQH 667
TDRN T+F+D AGGGDP LYQH
Sbjct: 254 TDRNFGTTFYDAAGGGDPELYQH 276
Score = 47.2 bits (107), Expect = 4e-04
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = +1
Query: 649 PNFISTFILIFGHPEVYILILPGFGIISHIIS 744
P FGHPEVYI+ILPGFGIIS I+S
Sbjct: 271 PELYQHLFWFFGHPEVYIMILPGFGIISQIVS 302
Score = 38.3 bits (85), Expect = 0.20
Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY---N 134
HKDIGTLY AEL PG + D DQ Y N
Sbjct: 36 HKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWN 95
Query: 135 TIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 254
++TAH N VP+++GAPD+AFP
Sbjct: 96 VLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFP 135
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 83.8 bits (198), Expect = 4e-15
Identities = 55/131 (41%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF---FTT 421
PR+NN+ F +E GAGTG TVYPPL+ N+AH G SVDL IF
Sbjct: 84 PRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAG 143
Query: 422 FSXXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLT 601
S I Y PLFV AV ITA A IT+LLT
Sbjct: 144 ISSILGAINFITTIMNMKPPAISQY---QTPLFVWAVLITAVLLLLSLPVLAAGITMLLT 200
Query: 602 DRNLNTSFFDP 634
DRNLNT+FFDP
Sbjct: 201 DRNLNTTFFDP 211
Score = 76.2 bits (179), Expect = 8e-13
Identities = 55/147 (37%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPP-LYY*FQEEL*KMVQEQDEQFTP 359
N L+PL++GAPD+AFP F PP L + + P
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 360 HFHLISHIEEDP*ILLFFSLHLAGISS 440
++H L FSLHLAGISS
Sbjct: 121 LAGNLAHAGASV-DLTIFSLHLAGISS 146
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 81.4 bits (192), Expect = 2e-14
Identities = 52/138 (37%), Positives = 64/138 (46%)
Frame = +2
Query: 254 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSXX 433
R+NNI F +VE GAGTG TVY PL+ +H G +VDLAIF S
Sbjct: 102 RLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGF 161
Query: 434 XXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 613
++PLF AV TA A +T+ + DRN
Sbjct: 162 SSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNF 221
Query: 614 NTSFFDPAGGGDPILYQH 667
NTSFF+ AGGGD +LYQH
Sbjct: 222 NTSFFEYAGGGDAVLYQH 239
Score = 44.4 bits (100), Expect = 0.003
Identities = 45/149 (30%), Positives = 57/149 (38%), Gaps = 4/149 (2%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTP 359
N L+PL+LGA D+AF F P L L + +T
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSAL--VEAGAGTGWTV 134
Query: 360 HFHLIS-HIEEDP*I-LLFFSLHLAGISS 440
+F L P + L FSLHL+G SS
Sbjct: 135 YFPLAGIQSHSGPAVDLAIFSLHLSGFSS 163
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 74.9 bits (176), Expect = 2e-12
Identities = 54/143 (37%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIFFT 418
PR+NNI F I+E G GTG T+ YPPLS +H G SVDLAIF
Sbjct: 124 PRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFAL 183
Query: 419 TFSXXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILL 598
S + L LF A + IT++L
Sbjct: 184 HLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWATWSSRSRYFL-------GITMVL 236
Query: 599 TDRNLNTSFFDPAGGGDPILYQH 667
TDRN NTSFF+ AGGGDPIL+QH
Sbjct: 237 TDRNFNTSFFEVAGGGDPILFQH 259
Score = 55.6 bits (128), Expect = 1e-06
Identities = 49/152 (32%), Positives = 66/152 (43%), Gaps = 7/152 (4%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 182
KDIGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 41 KDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVM 100
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPP-LYY*FQEEL*KMVQE----QDE 347
N L+PL++G PD+AFP F PP L F + V +
Sbjct: 101 PALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKD 160
Query: 348 QFTPHFHLISHIEEDP*I-LLFFSLHLAGISS 440
++ P L SH P + L F+LHL+G+SS
Sbjct: 161 KYPPLSGLQSH--SGPSVDLAIFALHLSGVSS 190
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILI+PGFGIIS IS
Sbjct: 264 FGHPEVYILIIPGFGIISTTIS 285
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 73.3 bits (172), Expect = 6e-12
Identities = 49/119 (41%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Frame = +3
Query: 87 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPE*II 266
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFP
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 267 *DFDSYPPPLYY*FQEEL*KMVQEQDEQFTPHFHLISHIEEDP*I-LLFFSLHLAGISS 440
F +P +Y + K +DE TP +L++ I P + L F LHLAG+SS
Sbjct: 84 MSFGFFPLHWHY-YSFFTVKGGLARDELSTP-LYLVT-ISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 71.3 bits (167), Expect = 2e-11
Identities = 44/139 (31%), Positives = 57/139 (41%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ F + E G G G T+YP L H + D +F
Sbjct: 98 PRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLG 157
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
K + S LF+ A ITA AG +T++L DRN
Sbjct: 158 ISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRN 217
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSF+D GGGD IL+QH
Sbjct: 218 FNTSFYDVVGGGDLILFQH 236
Score = 38.7 bits (86), Expect = 0.15
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYI++LP FG+IS I+
Sbjct: 241 FGHPEVYIILLPVFGLISTIV 261
Score = 36.7 bits (81), Expect = 0.62
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 102 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 254
G L GD Q YN ++T+H N +P++ G PD+ FP
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFP 98
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 66.9 bits (156), Expect = 5e-10
Identities = 39/84 (46%), Positives = 44/84 (52%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKD GTL AELG PG+L+GDDQ N IVTAHA
Sbjct: 13 HKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXM 72
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N LVPL++GAPD+AFP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFP 96
Score = 36.7 bits (81), Expect = 0.62
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 367
PR+NN+ F VE GAGTG TVYPPL+
Sbjct: 96 PRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 65.3 bits (152), Expect = 2e-09
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NN+ + G G G T+YPPLS++ G +DLA+F +
Sbjct: 97 PRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAG 156
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDR 607
+ SL P+ + + T+ A +T+LL DR
Sbjct: 157 MSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDR 216
Query: 608 NLNTSFFDPAGGGDPILYQH 667
+ +TSF+ P GGGDPIL+QH
Sbjct: 217 HFSTSFYYPEGGGDPILWQH 236
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYILILP FG+ISHI+
Sbjct: 241 FGHPEVYILILPAFGVISHIL 261
Score = 37.9 bits (84), Expect = 0.27
Identities = 21/84 (25%), Positives = 33/84 (39%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGT+Y EL +PG + +Y++I+T HA
Sbjct: 14 HKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVM 73
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N +PL++ D++ P
Sbjct: 74 PTSIGGLGNWFIPLMIKIKDLSMP 97
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 62.9 bits (146), Expect = 8e-09
Identities = 31/59 (52%), Positives = 36/59 (61%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFS 427
PR+NN+ F +VENGAGTG TVYPPLSS AH G SVDLAI+ T +
Sbjct: 11 PRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVDLAIYSTVIN 69
Score = 54.4 bits (125), Expect = 3e-06
Identities = 28/57 (49%), Positives = 31/57 (54%)
Frame = +1
Query: 520 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFGHP 690
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIF P
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWTP 153
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 61.7 bits (143), Expect = 2e-08
Identities = 43/140 (30%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFFTTFS 427
PRIN+I E G GTG T+YPPLS+++ +VD+ IF S
Sbjct: 100 PRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVS 159
Query: 428 XXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 607
K + L + ++ IT+ G + +LL+D
Sbjct: 160 GVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDL 219
Query: 608 NLNTSFFDPAGGGDPILYQH 667
+ NT FFDP GDPILYQH
Sbjct: 220 HFNTLFFDPTFAGDPILYQH 239
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILP FG+ISH+IS
Sbjct: 244 FGHPEVYILILPAFGVISHVIS 265
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 59.7 bits (138), Expect = 8e-08
Identities = 48/147 (32%), Positives = 57/147 (38%), Gaps = 2/147 (1%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTP 359
N LVP+++GAPD+AFP F PP L + P
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 360 HFHLISHIEEDP*ILLFFSLHLAGISS 440
+ L FSLHL+GISS
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISS 157
Score = 58.4 bits (135), Expect = 2e-07
Identities = 40/110 (36%), Positives = 45/110 (40%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+NNI F VE GAGTG TVYPPLS +H G SVDLAIF S
Sbjct: 95 PRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSG 154
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAG 580
+ LPLFV A+ +TA AG
Sbjct: 155 ISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 56.8 bits (131), Expect = 5e-07
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 176
HKDIGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 14 HKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFM 73
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 296
N VP+++G+PD+AFP F PP L
Sbjct: 74 VMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSL 113
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 56.0 bits (129), Expect = 9e-07
Identities = 37/99 (37%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 296
N LVP+++GAPD+AFP F PP L
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSL 109
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 54.4 bits (125), Expect = 3e-06
Identities = 38/139 (27%), Positives = 53/139 (38%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+N + F + G G+ T YPPLS S+D I
Sbjct: 106 PRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGLHTVG 164
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ + +FV +T+F AG++ LL DRN
Sbjct: 165 IGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLLLDRN 224
Query: 611 LNTSFFDPAGGGDPILYQH 667
NTSF+D GG+P+LYQH
Sbjct: 225 FNTSFYDTKKGGNPLLYQH 243
Score = 46.8 bits (106), Expect = 6e-04
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 176
HK IGT Y EL +PG G Q+YN+++T H
Sbjct: 21 HKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFL 80
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFP 254
N ++PL+LGAP++AFP
Sbjct: 81 VMPILIGGFGNWMLPLMLGAPEMAFP 106
Score = 38.7 bits (86), Expect = 0.15
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVY++ILP FGIIS +
Sbjct: 248 FGHPEVYVIILPVFGIISEAV 268
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 54.0 bits (124), Expect = 4e-06
Identities = 34/139 (24%), Positives = 58/139 (41%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+N +E G+GTG T+YPPLS+++++ G +D IF +
Sbjct: 103 PRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAG 160
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
++I + ++ +T+F ++ DR+
Sbjct: 161 IASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRH 220
Query: 611 LNTSFFDPAGGGDPILYQH 667
NT FF+ + GDP+LYQH
Sbjct: 221 YNTMFFESSNSGDPVLYQH 239
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYI+ILPGFGIIS ++S
Sbjct: 244 FGHPEVYIMILPGFGIISLLLS 265
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 53.2 bits (122), Expect = 7e-06
Identities = 39/113 (34%), Positives = 51/113 (45%)
Frame = +2
Query: 329 GAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSXXXXXXXXXXXXXXXXXXTIK*YII*S 508
G G G T+YPPLS G VD +F + TI + +
Sbjct: 217 GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFIS-----TIFSRLSFN 270
Query: 509 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
+ V A T+ A IT+LL DRN T+FF+P+GGGDPIL+QH
Sbjct: 271 CSIIVWAYLFTSVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDPILFQH 323
Score = 46.8 bits (106), Expect = 6e-04
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHI 738
FGHPEVY+LILPGFGI+SHI
Sbjct: 328 FGHPEVYVLILPGFGIVSHI 347
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 50.4 bits (115), Expect = 5e-05
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3
Query: 678 FWTS*SLYFNFTRIWYNFSYYFTRK 752
FWT SLYFNFT IWYNFSYYF K
Sbjct: 31 FWTPSSLYFNFTSIWYNFSYYFPSK 55
Score = 34.7 bits (76), Expect = 2.5
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +1
Query: 607 KLKYIIF*SCWRRRPNFISTFILIFGHP 690
K KYIIF S W F+STFILIF P
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTP 34
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 49.2 bits (112), Expect = 1e-04
Identities = 36/139 (25%), Positives = 53/139 (38%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+N + V+ G G Y PLS G+ D+ TF+
Sbjct: 111 PRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMITFTE 170
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ +PLFV ++ +T+F A T L+ DR
Sbjct: 171 VSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRL 230
Query: 611 LNTSFFDPAGGGDPILYQH 667
+ T FF+PA GGD +L+QH
Sbjct: 231 VGTHFFNPAEGGDVLLWQH 249
Score = 36.3 bits (80), Expect = 0.82
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYI+ LP G++S I++
Sbjct: 254 FGHPEVYIIFLPAVGMVSSIVA 275
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 48.8 bits (111), Expect = 1e-04
Identities = 34/112 (30%), Positives = 49/112 (43%)
Frame = +2
Query: 332 AGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSXXXXXXXXXXXXXXXXXXTIK*YII*SL 511
A G T YPPLSS SV+ ++F + + SL
Sbjct: 112 ASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSLWY--SL 165
Query: 512 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
LF ++ + + A IT++LTD++L T F+D GGDP+LYQH
Sbjct: 166 SLFCWSIVLVSLLLVLSLPVLAVGITLILTDKHLGTCFYDATMGGDPLLYQH 217
Score = 35.5 bits (78), Expect = 1.4
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVY++ILP FG+ S I
Sbjct: 222 FGHPEVYVVILPVFGLFSSSI 242
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILPGFG+ISH+I+
Sbjct: 215 FGHPEVYILILPGFGMISHVIA 236
Score = 38.3 bits (85), Expect = 0.20
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2
Query: 608 NLNTSFFDPAGGGDPILYQH 667
N T+FFDPAGGGD IL+QH
Sbjct: 191 NYYTTFFDPAGGGDXILFQH 210
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +1
Query: 523 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 675
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYILILPGFG+ISHI++
Sbjct: 3 FGHPEVYILILPGFGMISHIVA 24
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 47.6 bits (108), Expect = 3e-04
Identities = 31/83 (37%), Positives = 39/83 (46%)
Frame = +2
Query: 359 PLSSNIAHRGRSVDLAIFFTTFSXXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGI 538
PL+S+IAH G SVD+AIF + K + +PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 539 TAFXXXXXXXXXAGAITILLTDR 607
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +2
Query: 506 SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
S+PLF A+ T+ A A+ +L D TSFF+P GGGDP++YQH
Sbjct: 191 SMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVYQH 244
Score = 34.7 bits (76), Expect = 2.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
+ HP VYI+ILP FG+IS +I
Sbjct: 249 YSHPAVYIMILPFFGVISEVI 269
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 46.8 bits (106), Expect = 6e-04
Identities = 18/31 (58%), Positives = 26/31 (83%)
Frame = +2
Query: 575 AGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
AGA+T+L D+ L T+FF+PA GGDP++YQ+
Sbjct: 159 AGAVTMLFLDKYLGTNFFNPAKGGDPLIYQN 189
Score = 35.9 bits (79), Expect = 1.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 99 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 254
PG + D + YN ++T H N L+PL++GA D+AFP
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFP 53
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 46.4 bits (105), Expect = 8e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 667 FILIFGHPEVYILILPGFGIISHII 741
+ IFGHPEVYILILPGFG+IS +I
Sbjct: 253 YFWIFGHPEVYILILPGFGMISEVI 277
Score = 40.3 bits (90), Expect = 0.050
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 509 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
+PLFV + + A A+ +LL DR L ++FFDP GG +L+QH
Sbjct: 200 VPLFVWMMLMQAILIILALPALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQH 252
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +1
Query: 652 NFISTFILIFGHPEVYILILPGFGIISHIIS 744
NF++ F L FGHPEVYILILP FG+ S I S
Sbjct: 294 NFLNMFWL-FGHPEVYILILPAFGVYSEIFS 323
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 44.8 bits (101), Expect = 0.002
Identities = 39/120 (32%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Frame = +2
Query: 332 AGTG*TVYPPLSSNIAHRGRSVDL---AIFFTTFSXXXXXXXXXXXXXXXXXXTIK*YII 502
AG G T Y PLS+N+ G L AIF T S + Y+
Sbjct: 155 AGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLRAPGMT-YM- 212
Query: 503 *SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGDPILYQH 667
LPL + + +TA A +LL DR+ T FF GGGDPIL+QH
Sbjct: 213 -RLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGDPILWQH 271
Score = 39.9 bits (89), Expect = 0.066
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +1
Query: 676 IFGHPEVYILILPGFGIISHIIS 744
IFGHPEVYI+ILP +GI+ ++S
Sbjct: 275 IFGHPEVYIMILPAWGILGDVLS 297
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 44.4 bits (100), Expect = 0.003
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +3
Query: 678 FWTS*SLYFNFTRIWYNFSYYFTRK 752
FW+S SLYFN IWYNF YY+T K
Sbjct: 7 FWSSSSLYFNSPSIWYNFPYYYTSK 31
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +2
Query: 317 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 412
+VE G G G TVYPPL+S + H G SVD AIF
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIF 43
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIG LY EL +PG + + YN+++T+H
Sbjct: 94 HKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFAT 153
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N L+PL++GA D+AFP
Sbjct: 154 PIIAAFS-NYLIPLLIGADDMAFP 176
Score = 39.1 bits (87), Expect = 0.12
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYI++LP GIIS+I+
Sbjct: 323 FGHPEVYIIVLPPMGIISYIL 343
Score = 33.9 bits (74), Expect = 4.4
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = +2
Query: 581 AITILLTDRNLNTSFFDPAGGGDPILYQH 667
AI +LL DRN TSFF AG G IL+QH
Sbjct: 292 AIMMLLFDRNFGTSFF--AGEGGAILWQH 318
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 44.0 bits (99), Expect = 0.004
Identities = 40/137 (29%), Positives = 49/137 (35%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+ N+ F + G G VYPP SS +AH +VDL IF +
Sbjct: 85 PRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAG 144
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
K + LF A AIT+L R
Sbjct: 145 ISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRX 204
Query: 611 LNTSFFDPAGGGDPILY 661
N SFF P G P +
Sbjct: 205 XNXSFFXPXXXGXPXXF 221
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 43.2 bits (97), Expect = 0.007
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 509 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
+P+FV G +LL D + TSFF P GGGDP+L+QH
Sbjct: 207 MPVFVWTAWAAQTIQLIGLPALTGGAVMLLFDLSFGTSFFRPEGGGDPVLFQH 259
Score = 33.9 bits (74), Expect = 4.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 649 PNFISTFILIFGHPEVYILILPGFGIISHI 738
P F + HP VY+L+LP FGI S +
Sbjct: 254 PVLFQHFFWFYSHPAVYVLVLPVFGIFSEL 283
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 43.2 bits (97), Expect = 0.007
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHI 738
FGHPEVY+LILP FGI+SHI
Sbjct: 2 FGHPEVYVLILPVFGIVSHI 21
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +1
Query: 676 IFGHPEVYILILPGFGIISHII 741
IFGHPEVYILILP FGI S +I
Sbjct: 246 IFGHPEVYILILPAFGIFSEVI 267
>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
Bruchidius|Rep: Cytochrome c oxidase subunit I -
Bruchidius aff. varius GLK-2003
Length = 339
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 691 EVYILILPGFGIISHIISQE 750
EVYILILPGFG+ISHIISQE
Sbjct: 155 EVYILILPGFGMISHIISQE 174
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 42.7 bits (96), Expect = 0.009
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 180 XXXXXXXXXN*LVPLILGAPDIAF 251
N L+PL+LGA D+AF
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAF 100
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 42.3 bits (95), Expect = 0.012
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 649 PNFISTFILIFGHPEVYILILPGFGIISHIIS 744
P + I+GHPEVYI+ILP FGI S IIS
Sbjct: 268 PMLWANLFWIWGHPEVYIVILPAFGIFSEIIS 299
Score = 33.5 bits (73), Expect = 5.8
Identities = 23/84 (27%), Positives = 30/84 (35%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK +G +Y A+L P + D YN I T H
Sbjct: 53 HKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAM 112
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N +VPL +GA D+AFP
Sbjct: 113 PFLIGLI-NVVVPLQIGARDVAFP 135
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 41.9 bits (94), Expect = 0.016
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = +2
Query: 317 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSXXXXXXXXXXXXXXXXXXTIK*Y 496
++ G TG T Y P S++ V F FS I +
Sbjct: 146 MLNGGLDTGWTFYTPYSAHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWF 205
Query: 497 II*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL-NTSFFDPAGGGDPILYQH 667
+PLFV A+ T+ G + +L+T NL FDPA GGDP+L+QH
Sbjct: 206 ---KMPLFVWAIYATS-CIQVLATPVIGLLLVLVTVENLFGFGMFDPARGGDPVLFQH 259
Score = 39.1 bits (87), Expect = 0.12
Identities = 24/84 (28%), Positives = 30/84 (35%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG ++ EL PG I D YN T H
Sbjct: 42 HKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMI 101
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N ++PL+LGA D+AFP
Sbjct: 102 PAIPAVFGNFMLPLMLGAKDVAFP 125
Score = 34.3 bits (75), Expect = 3.3
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
+ HP VYI++LP FG++S +++
Sbjct: 264 YSHPAVYIMVLPSFGVMSEVVA 285
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 41.9 bits (94), Expect = 0.016
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 670 ILIFGHPEVYILILPGFGIISHIIS 744
I +GHPEVYILILP FGI S IIS
Sbjct: 274 IWAWGHPEVYILILPSFGIFSEIIS 298
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 41.5 bits (93), Expect = 0.022
Identities = 31/117 (26%), Positives = 46/117 (39%)
Frame = +2
Query: 317 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSXXXXXXXXXXXXXXXXXXTIK*Y 496
+V+ GA TG T Y P S+ + V L F FS +
Sbjct: 139 MVQGGADTGWTFYTPYSTTTITKVVPVLLGAFILGFSSILTGLNFIVTTHTMRAPGMGWT 198
Query: 497 II*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
LPLFV ++ T+ ++ ++ + FDPA GGDP+L+QH
Sbjct: 199 ---RLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGWGIFDPARGGDPVLFQH 252
Score = 39.5 bits (88), Expect = 0.088
Identities = 23/85 (27%), Positives = 32/85 (37%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG ++ EL PG I D YN + T H
Sbjct: 35 HKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMI 94
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE 257
N L+P+++GA D+AFP+
Sbjct: 95 PAIPSGFGNFLLPIMIGAKDVAFPK 119
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 41.1 bits (92), Expect = 0.029
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYI ILP GI+SHI+
Sbjct: 286 FGHPEVYIAILPAMGIVSHIL 306
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 40.7 bits (91), Expect = 0.038
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYILILP GIIS +I
Sbjct: 258 FGHPEVYILILPAMGIISEVI 278
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 40.7 bits (91), Expect = 0.038
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 649 PNFISTFILIFGHPEVYILILPGFGIISHIISQ 747
P FGHPEVYIL+LP G++S +I +
Sbjct: 238 PRLFQHIFWFFGHPEVYILVLPAMGLVSEVIQR 270
Score = 36.7 bits (81), Expect = 0.62
Identities = 39/146 (26%), Positives = 54/146 (36%), Gaps = 7/146 (4%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAHRGRS-VDLAIFFTTF 424
PRIN + F + ++G G T+YPPLS+ G + L I F
Sbjct: 101 PRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLSTISKSIGVDLILLGIIIAGF 160
Query: 425 SXXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 604
S IK + + LF +V + A +LL +
Sbjct: 161 SSTLTGINFILTITRLRRPDIK---MLDMSLFAWSVLAASMLMVTALPPLAAGAIMLLLE 217
Query: 605 RNLNTSFF-----DPAGGGDPILYQH 667
R+L FF DPA GDP L+QH
Sbjct: 218 RHLGMHFFTPVPGDPAASGDPRLFQH 243
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 40.3 bits (90), Expect = 0.050
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
+GHPEVYIL+LP FGI S ++S
Sbjct: 283 WGHPEVYILVLPAFGIFSEVVS 304
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 40.3 bits (90), Expect = 0.050
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 2/141 (1%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAHR-GRSVDLAIFFTTF 424
PR+N I F ++ +G T+YPPLS+ A G ++DL++
Sbjct: 105 PRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHV 164
Query: 425 SXXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 604
++ ++ ++ +T+ AIT LL D
Sbjct: 165 LGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGLLLD 224
Query: 605 RNLNTSFFDPAGGGDPILYQH 667
RN+N++ +D GDP+LYQH
Sbjct: 225 RNINSTIYDVI--GDPVLYQH 243
Score = 36.7 bits (81), Expect = 0.62
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVY++ILP FG+ S I++
Sbjct: 248 FGHPEVYVIILPVFGLTSLILT 269
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 40.3 bits (90), Expect = 0.050
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +2
Query: 515 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
LF ++ IT AG IT+LL+DRN N FF GG PIL+Q+
Sbjct: 16 LFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQY 66
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 40.3 bits (90), Expect = 0.050
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYI+ LP FGI+S +IS
Sbjct: 278 FGHPEVYIVALPAFGIVSDLIS 299
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 39.5 bits (88), Expect = 0.088
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +2
Query: 575 AGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
A A+ +LLTDR + FF+PA GGDPI Y H
Sbjct: 205 AAALLMLLTDRLGVSGFFNPAVGGDPIAYAH 235
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 39.5 bits (88), Expect = 0.088
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVY+L LP FGI+S II
Sbjct: 263 FGHPEVYVLALPFFGIVSEII 283
Score = 34.7 bits (76), Expect = 2.5
Identities = 22/84 (26%), Positives = 32/84 (38%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK +G +Y AEL PG ++ +N + T H
Sbjct: 38 HKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGT 97
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N ++PL +GAPD+AFP
Sbjct: 98 PIVWGFA-NYVLPLQIGAPDVAFP 120
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 39.1 bits (87), Expect = 0.12
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYILILP GIIS ++
Sbjct: 256 FGHPEVYILILPTMGIISEVL 276
Score = 37.1 bits (82), Expect = 0.47
Identities = 21/53 (39%), Positives = 26/53 (49%)
Frame = +2
Query: 509 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
+PLFV + AF A LL DR+ T FF P GGD +L+QH
Sbjct: 199 MPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQH 251
Score = 33.1 bits (72), Expect = 7.6
Identities = 22/84 (26%), Positives = 31/84 (36%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG +Y +LG P + +YN + T H
Sbjct: 31 HKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLM 90
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N +VPL++GA D+AFP
Sbjct: 91 PLNVGLG-NYMVPLMIGARDMAFP 113
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 38.7 bits (86), Expect = 0.15
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
+GHPEVYILILP FG+ S + S
Sbjct: 282 WGHPEVYILILPAFGVFSEVTS 303
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 38.3 bits (85), Expect = 0.20
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 676 IFGHPEVYILILPGFGIISHII 741
I+GHPEVY ++LP FG IS II
Sbjct: 300 IWGHPEVYFVVLPAFGFISEII 321
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 38.3 bits (85), Expect = 0.20
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYILILP G++S ++
Sbjct: 236 FGHPEVYILILPAMGLVSELL 256
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 38.3 bits (85), Expect = 0.20
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 649 PNFISTFILIFGHPEVYILILPGFGIISHII 741
P F FGHPEVY+L+LP GI+S I+
Sbjct: 282 PIFWQHLFWFFGHPEVYVLVLPPMGIVSLIL 312
Score = 37.1 bits (82), Expect = 0.47
Identities = 32/146 (21%), Positives = 50/146 (34%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIG LY EL + +YN ++T+H
Sbjct: 68 HKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGT 127
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTPH 362
N +PL++ A D+AFP F PP + L + +T +
Sbjct: 128 PMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMY 186
Query: 363 FHLISHIEEDP*ILLFFSLHLAGISS 440
L + ++ LHL G+S+
Sbjct: 187 TPLSLQMSSPAVDMMMLGLHLTGVSA 212
Score = 37.1 bits (82), Expect = 0.47
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +2
Query: 581 AITILLTDRNLNTSFFDPAGGGDPILYQH 667
A+ +LL DRN T+FF A GGDPI +QH
Sbjct: 260 ALIMLLLDRNFGTTFFTVA-GGDPIFWQH 287
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 37.9 bits (84), Expect = 0.27
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 5/144 (3%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLA---IFFT 418
PR+N + + E+GA G T+Y PL++ I G +DLA IF
Sbjct: 103 PRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLAALAIFLF 162
Query: 419 TFSXXXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILL 598
+ S I + +P+F ++ T +LL
Sbjct: 163 SLSVTLGTINFLVTIAAMRAPGIGWF---KMPMFTWSILFTVILMLWAFPPLMVGGALLL 219
Query: 599 TDRNLNTSFF-DPAGGGDPILYQH 667
DRNL T FF +PAGG +L+ H
Sbjct: 220 LDRNLGTEFFLNPAGGA--LLWDH 241
Score = 35.1 bits (77), Expect = 1.9
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVYIL+ P G ++ +IS
Sbjct: 246 FGHPEVYILLFPALGAMADVIS 267
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 37.5 bits (83), Expect = 0.35
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXX 179
HK +G LY EL G I DD +YNT + H
Sbjct: 14 HKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQ 73
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFP 254
N +PL++GA D+AFP
Sbjct: 74 IPALTGFFANYFIPLMIGAKDVAFP 98
Score = 35.5 bits (78), Expect = 1.4
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 581 AITILLTDRNLNTSFFDPAGGGDPILYQH 667
A+T+L D+ + T FFD A GGD + YQ+
Sbjct: 205 AVTMLTFDKYIGTHFFDAAAGGDALTYQN 233
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 37.5 bits (83), Expect = 0.35
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVY+LI+P FG I+ I+
Sbjct: 399 FGHPEVYVLIIPTFGFINMIV 419
Score = 35.5 bits (78), Expect = 1.4
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 581 AITILLTDRNLNTSFFDPAGGGDPILYQH 667
A+ ++ DR+ T+FF+ A GGDPIL QH
Sbjct: 366 AVIMMAFDRHWQTTFFEYAYGGDPILSQH 394
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 37.1 bits (82), Expect = 0.47
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 581 AITILLTDRNLNTSFFDPAGGGDPILYQH 667
A +L DRN T FFD A GG P+L+QH
Sbjct: 241 AFLLLWLDRNAGTHFFDVAHGGRPLLWQH 269
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 37.1 bits (82), Expect = 0.47
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 509 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQ 664
+P++V +V + A ++L +R + S+F+PA GGDP+L+Q
Sbjct: 191 MPIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQ 242
Score = 34.7 bits (76), Expect = 2.5
Identities = 22/84 (26%), Positives = 30/84 (35%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG +Y +L P + + YN I+T H
Sbjct: 24 HKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFII 83
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N +VPL+LGA D+A P
Sbjct: 84 QAGLTGFGNFVVPLMLGARDVALP 107
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 36.7 bits (81), Expect = 0.62
Identities = 32/121 (26%), Positives = 39/121 (32%)
Frame = +1
Query: 256 NK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFHYI*QVF 435
NK +KIL TPL Y N C K C + +NSLP Y T R +F
Sbjct: 81 NKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCSSV 140
Query: 436 HXXXXXXXXXXXXXXXXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSKLK 615
CM +YS + S+YNI K K
Sbjct: 141 FNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPKPK 200
Query: 616 Y 618
Y
Sbjct: 201 Y 201
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 36.7 bits (81), Expect = 0.62
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL PG+ L G+ Q++N +V HA
Sbjct: 12 KDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLV 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 296
N L+PL++GA D++F F PP L
Sbjct: 72 MPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPAL 110
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 35.9 bits (79), Expect = 1.1
Identities = 32/139 (23%), Positives = 46/139 (33%)
Frame = +2
Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
PR+N + ++ G YPPL+ G +D TF
Sbjct: 118 PRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTFME 177
Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
+ + +P+FV AV + +F A +L DR
Sbjct: 178 ISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALDRM 237
Query: 611 LNTSFFDPAGGGDPILYQH 667
FF A GDPIL+QH
Sbjct: 238 AGMHFFT-AASGDPILWQH 255
Score = 35.9 bits (79), Expect = 1.1
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYI+ +P G++S II
Sbjct: 260 FGHPEVYIIFIPALGMVSSII 280
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 35.5 bits (78), Expect = 1.4
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYI+ LP G++S I+
Sbjct: 264 FGHPEVYIIFLPAAGLVSMIV 284
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 35.1 bits (77), Expect = 1.9
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHII 741
FGHPEVYI+ LP G++S I+
Sbjct: 323 FGHPEVYIIFLPAAGMVSMIV 343
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 676 IFGHPEVYILILPGFGIISHII 741
+FGHPEVYI+ LP G IS I+
Sbjct: 253 LFGHPEVYIIFLPAAGAISTIL 274
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 676 IFGHPEVYILILPGFGIISHII 741
+FGHPEVYI+ LP G IS I+
Sbjct: 253 LFGHPEVYIIFLPAAGAISTIL 274
Score = 34.3 bits (75), Expect = 3.3
Identities = 26/110 (23%), Positives = 40/110 (36%)
Frame = +2
Query: 338 TG*TVYPPLSSNIAHRGRSVDLAIFFTTFSXXXXXXXXXXXXXXXXXXTIK*YII*SLPL 517
+G +YPPLSS + G + D + TF + +P+
Sbjct: 140 SGWFMYPPLSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPI 199
Query: 518 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 667
F +TA +L +R + FF A GGD +L+QH
Sbjct: 200 FAWYALVTAVMILTGFPPLILGSILLELERAFDMPFFQAAAGGDALLWQH 249
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 33.9 bits (74), Expect = 4.4
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +1
Query: 682 GHPEVYILILPGFGIISHIIS 744
GHPEVYI+++P GI S +I+
Sbjct: 301 GHPEVYIVLIPALGITSEVIA 321
>UniRef50_Q1E8L1 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 416
Score = 33.9 bits (74), Expect = 4.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 649 PNFISTFILIFGHPEVYILILPGFGIISHIISQ 747
P S F ++FGH EV + PG GI+S ++ Q
Sbjct: 78 PTIQSNFYIMFGHFEVEVKAAPGRGIVSSVVMQ 110
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 33.9 bits (74), Expect = 4.4
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 679 FGHPEVYILILPGFGIISHIIS 744
FGHPEVY+L+LPG G + +S
Sbjct: 267 FGHPEVYLLLLPGTGAMFDYLS 288
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 33.5 bits (73), Expect = 5.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 602 DRNLNTSFFDPAGGGDPILYQH 667
+R + FFDP GGDP+L+QH
Sbjct: 254 ERGFDWPFFDPERGGDPLLWQH 275
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 33.5 bits (73), Expect = 5.8
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 14/128 (10%)
Frame = +2
Query: 326 NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFFTTFSXXXXXXXXXXXXXXXXXXTIK*Y 496
+GA G T YPPLS ++ G + L + T
Sbjct: 155 HGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTTIIQMRAPGM 214
Query: 497 II*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP-----------AGG 643
+ LPL + A+ ITA A ++L DR + T FF P AGG
Sbjct: 215 TMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVVNNSPMAAGG 274
Query: 644 GDPILYQH 667
G P+L+QH
Sbjct: 275 GQPLLWQH 282
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 33.1 bits (72), Expect = 7.6
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 676 IFGHPEVYILILPGFGIISHII 741
+FGHPEVYI+ LP G+++ ++
Sbjct: 279 LFGHPEVYIIFLPAAGMVATML 300
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 33.1 bits (72), Expect = 7.6
Identities = 25/84 (29%), Positives = 31/84 (36%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIG LY EL + G+ + YN V+ H
Sbjct: 22 HKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFIS 81
Query: 183 XXXXXXXXN*LVPLILGAPDIAFP 254
N LVPL +GA D+AFP
Sbjct: 82 PFAFGFA-NYLVPLQIGADDLAFP 104
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,923,980
Number of Sequences: 1657284
Number of extensions: 10078563
Number of successful extensions: 22880
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 21299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22722
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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