Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00740
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    92   9e-20
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.0  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   6.7  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 50/139 (35%), Positives = 65/139 (46%)
 Frame = +2

Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTTFSX 430
           PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI     + 
Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTG 161

Query: 431 XXXXXXXXXXXXXXXXXTIK*YII*SLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 610
                                  +  +PLF  A+ IT+          AG + +L +DRN
Sbjct: 162 ISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRN 221

Query: 611 LNTSFFDPAGGGDPILYQH 667
           LNTSF+ P GGGDP+LYQH
Sbjct: 222 LNTSFYAPEGGGDPVLYQH 240



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
 Frame = +3

Query: 6   KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
           KDI  LY                    EL  PGS  L G+ Q+YN  ++AH         
Sbjct: 18  KDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFI 77

Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 296
                    N LVPL++GAPD+A+P      F   PP L
Sbjct: 78  IPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPAL 116



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +1

Query: 679 FGHPEVYILILPGFGIISHII 741
           FGHPEVYILI+P FG++SHII
Sbjct: 245 FGHPEVYILIMPAFGVVSHII 265


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 423 NVVKKIARSTDLPLCAILDESGG*TVHPVPAPFST 319
           N+V   + +TDL +   +  SGG T+H  P  FST
Sbjct: 3   NIVVLGSMNTDLVMRTKICPSGGETIHGEPDGFST 37


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 696 NFRMSKNQNKC*YKIGSPPPAGSKNDVFKFRS 601
           N+R+S  +++C    G+PP   SK+DV    S
Sbjct: 477 NYRISYGKDRC----GNPPRTNSKSDVLSVSS 504


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 277 TPTPLPYIINFKKNCRKWCRNRMNS 351
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,027
Number of Sequences: 5004
Number of extensions: 42061
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)