Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00739
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.9  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   6.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.6  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 91  TNNNMLSNYQ*NYGTKKL 144
           +NN    NY  NY +KKL
Sbjct: 306 SNNYNYKNYNNNYNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 91  TNNNMLSNYQ*NYGTKKL 144
           +NN    NY  NY +KKL
Sbjct: 317 SNNYNYKNYNNNYNSKKL 334


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 306 NGDKTINFHLMIFIVVIIFTNKS*PIIFVIGIHKILKK 419
           N D  I F  ++ ++V +FT  S     V+ + K+ K+
Sbjct: 61  NSDTYIGFLFVLGLIVPVFTIVSSYAAIVLTLKKVRKR 98


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 484 NYPME*CTSILNGPTRLYQLNYFFNILCIPI 392
           NY      +  N   +LY  NY  NI  IP+
Sbjct: 88  NYKYSNYNNYNNYNKKLYYKNYIINIEQIPV 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,450
Number of Sequences: 438
Number of extensions: 4851
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)