Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00738
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.48 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   3.4  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   3.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.4  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   4.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.9  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 69  PTNNTNRCTKLKTPTYTTRSSLKPNTTPAV 158
           PT +T   T L T  +TT+ S KP   P V
Sbjct: 163 PTTSTTTRTTLTTK-FTTKPSTKPTNKPVV 191


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 200 PPVEDSAEVLPRNSYRRCRIRF*AAPGSV 114
           PP ED    +P+N+ +  +  F   PG++
Sbjct: 217 PPEEDDDSNIPQNNPKNKQHNFNLPPGAI 245


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 349 PVYCPEQAPEPEYCTERMYPPY 414
           P + P  +P P YC +  Y PY
Sbjct: 21  PPHNPAYSPPPSYC-DPWYNPY 41


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 248 SDATPGSSISTSITAQRVLWINTSSTDTSN 337
           ++A PG+S S   +A +  W+N  +    N
Sbjct: 347 ANAAPGNSASNRHSAWQSHWLNKGAEQAKN 376


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 283 NHGAESAMDQHQQYRYEQQCYRPVYCPEQAPEP 381
           NH  ++   QH++  ++QQ   P+  P +   P
Sbjct: 90  NHRYKTKRAQHEKGMHDQQNNNPLPSPRRVAVP 122


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 355 YCPEQAPEPE 384
           Y P Q+PEPE
Sbjct: 216 YSPSQSPEPE 225


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,800
Number of Sequences: 336
Number of extensions: 2861
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)